Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC244098.3-201ENST00000424803 96 ntBASIC0.8□□□□□ -2.28
SOX2P48431 MIR3612-201ENST00000579753 87 ntBASIC0.8□□□□□ -2.28
SOX2P48431 MIR4439-201ENST00000583746 80 ntBASIC0.8□□□□□ -2.28
SOX2P48431 Y_RNA.95-201ENST00000363079 95 ntBASIC0.79□□□□□ -2.28
SOX2P48431 Y_RNA.342-201ENST00000365352 113 ntBASIC0.79□□□□□ -2.28
SOX2P48431 MIR489-201ENST00000384923 84 ntBASIC0.79□□□□□ -2.28
SOX2P48431 MIR590-201ENST00000385008 97 ntBASIC0.79□□□□□ -2.28
SOX2P48431 ACA64.5-201ENST00000516207 127 ntBASIC0.79□□□□□ -2.28
SOX2P48431 AC138907.6-201ENST00000568401 126 ntBASIC0.79□□□□□ -2.28
SOX2P48431 AC138869.1-201ENST00000568623 124 ntBASIC0.79□□□□□ -2.28
SOX2P48431 Y_RNA.818-201ENST00000618813 71 ntBASIC0.79□□□□□ -2.28
SOX2P48431 uc_338.16-201ENST00000621804 95 ntBASIC0.79□□□□□ -2.28
SOX2P48431 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
SOX2P48431 Y_RNA.32-201ENST00000362589 110 ntBASIC0.78□□□□□ -2.28
SOX2P48431 AC092628.1-201ENST00000436250 252 ntBASIC0.78□□□□□ -2.28
SOX2P48431 AC109327.2-201ENST00000448339 378 ntBASIC0.78□□□□□ -2.28
SOX2P48431 RNU6-469P-201ENST00000516253 101 ntBASIC0.78□□□□□ -2.28
SOX2P48431 SNORA31.14-201ENST00000516728 116 ntBASIC0.78□□□□□ -2.28
SOX2P48431 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.78□□□□□ -2.28
SOX2P48431 RNU6-1163P-201ENST00000364516 107 ntBASIC0.77□□□□□ -2.29
SOX2P48431 RNU4-45P-201ENST00000365469 141 ntBASIC0.77□□□□□ -2.29
SOX2P48431 Y_RNA.544-201ENST00000384650 113 ntBASIC0.77□□□□□ -2.29
SOX2P48431 SNORD63B-201ENST00000411005 70 ntBASIC0.77□□□□□ -2.29
SOX2P48431 RNA5SP222-201ENST00000411039 105 ntBASIC0.77□□□□□ -2.29
SOX2P48431 RNU6-537P-201ENST00000517277 103 ntBASIC0.77□□□□□ -2.29
SOX2P48431 AC211469.2-201ENST00000605461 205 ntBASIC0.77□□□□□ -2.29
SOX2P48431 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.77□□□□□ -2.29
SOX2P48431 AC091304.10-201ENST00000641554 121 ntBASIC0.77□□□□□ -2.29
SOX2P48431 Y_RNA.57-201ENST00000362806 113 ntBASIC0.76□□□□□ -2.29
SOX2P48431 RNU6-1125P-201ENST00000363601 107 ntBASIC0.76□□□□□ -2.29
SOX2P48431 RNU6-147P-201ENST00000383983 107 ntBASIC0.76□□□□□ -2.29
SOX2P48431 RNU6-480P-201ENST00000384332 107 ntBASIC0.76□□□□□ -2.29
SOX2P48431 TRAJ51-201ENST00000504127 63 ntBASIC0.76□□□□□ -2.29
SOX2P48431 RNU6-795P-201ENST00000516323 103 ntBASIC0.76□□□□□ -2.29
SOX2P48431 RNU6-135P-201ENST00000516769 101 ntBASIC0.76□□□□□ -2.29
SOX2P48431 RNU6-86P-201ENST00000606534 107 ntBASIC0.76□□□□□ -2.29
SOX2P48431 AC012531.4-201ENST00000616509 177 ntBASIC0.76□□□□□ -2.29
SOX2P48431 MIR18A-201ENST00000362310 71 ntBASIC0.75□□□□□ -2.29
SOX2P48431 Y_RNA.96-201ENST00000363092 109 ntBASIC0.75□□□□□ -2.29
SOX2P48431 Y_RNA.107-201ENST00000363190 121 ntBASIC0.75□□□□□ -2.29
SOX2P48431 SNORD114-2-201ENST00000363953 78 ntBASIC0.75□□□□□ -2.29
SOX2P48431 RNA5SP245-201ENST00000364239 121 ntBASIC0.75□□□□□ -2.29
SOX2P48431 RNU6-109P-201ENST00000516364 107 ntBASIC0.75□□□□□ -2.29
SOX2P48431 RNU6-184P-201ENST00000516514 107 ntBASIC0.75□□□□□ -2.29
SOX2P48431 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.75□□□□□ -2.29
SOX2P48431 Y_RNA.93-201ENST00000363066 109 ntBASIC0.74□□□□□ -2.29
SOX2P48431 RNU6-1244P-201ENST00000363614 108 ntBASIC0.74□□□□□ -2.29
SOX2P48431 RNU6-32P-201ENST00000383948 107 ntBASIC0.74□□□□□ -2.29
SOX2P48431 RNU6-13P-201ENST00000384248 107 ntBASIC0.74□□□□□ -2.29
SOX2P48431 RNU6-12P-201ENST00000384604 107 ntBASIC0.74□□□□□ -2.29
SOX2P48431 RNU6-813P-201ENST00000384691 107 ntBASIC0.74□□□□□ -2.29
SOX2P48431 RNU6-41P-201ENST00000384741 107 ntBASIC0.74□□□□□ -2.29
SOX2P48431 MIR519A1-201ENST00000385257 85 ntBASIC0.74□□□□□ -2.29
SOX2P48431 MIR644A-201ENST00000385262 94 ntBASIC0.74□□□□□ -2.29
SOX2P48431 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.74□□□□□ -2.29
SOX2P48431 AC097635.1-201ENST00000450678 155 ntBASIC0.74□□□□□ -2.29
SOX2P48431 MIR4698-201ENST00000577795 80 ntBASIC0.74□□□□□ -2.29
SOX2P48431 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.74□□□□□ -2.29
SOX2P48431 SNORD114-27-201ENST00000363766 70 ntBASIC0.73□□□□□ -2.29
SOX2P48431 RNU6-153P-201ENST00000364422 104 ntBASIC0.73□□□□□ -2.29
SOX2P48431 SNORD114-22-201ENST00000365423 72 ntBASIC0.73□□□□□ -2.29
SOX2P48431 RNU6-110P-201ENST00000384508 104 ntBASIC0.73□□□□□ -2.29
SOX2P48431 MIR516A2-201ENST00000384888 90 ntBASIC0.73□□□□□ -2.29
SOX2P48431 MIR7-2-201ENST00000384970 110 ntBASIC0.73□□□□□ -2.29
SOX2P48431 MIR516A1-201ENST00000385033 90 ntBASIC0.73□□□□□ -2.29
SOX2P48431 RNU6-1254P-201ENST00000391266 104 ntBASIC0.73□□□□□ -2.29
SOX2P48431 AC244505.6-201ENST00000452829 130 ntBASIC0.73□□□□□ -2.29
SOX2P48431 PSMC1P5-201ENST00000512850 177 ntBASIC0.73□□□□□ -2.29
SOX2P48431 Y_RNA.809-201ENST00000516058 95 ntBASIC0.73□□□□□ -2.29
SOX2P48431 RNU6-1223P-201ENST00000517124 104 ntBASIC0.73□□□□□ -2.29
SOX2P48431 MIR3678-201ENST00000578455 94 ntBASIC0.73□□□□□ -2.29
SOX2P48431 MIR4777-201ENST00000583710 86 ntBASIC0.73□□□□□ -2.29
SOX2P48431 MIR151B-201ENST00000584249 96 ntBASIC0.73□□□□□ -2.29
SOX2P48431 MIR4653-201ENST00000585107 83 ntBASIC0.73□□□□□ -2.29
SOX2P48431 Y_RNA.467-201ENST00000384297 102 ntBASIC0.72□□□□□ -2.29
SOX2P48431 MIR181B2-201ENST00000385004 89 ntBASIC0.72□□□□□ -2.29
SOX2P48431 MIR599-201ENST00000385069 95 ntBASIC0.72□□□□□ -2.29
SOX2P48431 MIR146A-201ENST00000385201 99 ntBASIC0.72□□□□□ -2.29
SOX2P48431 RNU6-243P-201ENST00000391140 107 ntBASIC0.72□□□□□ -2.29
SOX2P48431 RNU7-195P-201ENST00000458793 62 ntBASIC0.72□□□□□ -2.29
SOX2P48431 RNU7-106P-201ENST00000459514 67 ntBASIC0.72□□□□□ -2.29
SOX2P48431 RNA5SP480-201ENST00000516840 109 ntBASIC0.72□□□□□ -2.29
SOX2P48431 Y_RNA.705-201ENST00000516862 110 ntBASIC0.72□□□□□ -2.29
SOX2P48431 MIR6515-201ENST00000619843 57 ntBASIC0.72□□□□□ -2.29
SOX2P48431 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
SOX2P48431 RNU6-1229P-201ENST00000364295 107 ntBASIC0.71□□□□□ -2.3
SOX2P48431 SNORA36.2-201ENST00000384004 127 ntBASIC0.71□□□□□ -2.3
SOX2P48431 Y_RNA.495-201ENST00000384435 112 ntBASIC0.71□□□□□ -2.3
SOX2P48431 MIR532-201ENST00000385025 91 ntBASIC0.71□□□□□ -2.3
SOX2P48431 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.71□□□□□ -2.3
SOX2P48431 RNU6-351P-201ENST00000516097 100 ntBASIC0.71□□□□□ -2.3
SOX2P48431 MIR548Z-201ENST00000584743 97 ntBASIC0.71□□□□□ -2.3
SOX2P48431 MIR2052-201ENST00000636055 55 ntBASIC0.71□□□□□ -2.3
SOX2P48431 Y_RNA.36-201ENST00000362602 112 ntBASIC0.7□□□□□ -2.3
SOX2P48431 RNU6-1260P-201ENST00000362944 107 ntBASIC0.7□□□□□ -2.3
SOX2P48431 RNU6-972P-201ENST00000391208 107 ntBASIC0.7□□□□□ -2.3
SOX2P48431 AL606490.4-201ENST00000423117 127 ntBASIC0.7□□□□□ -2.3
SOX2P48431 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.7□□□□□ -2.3
SOX2P48431 RNU6-158P-201ENST00000517104 100 ntBASIC0.7□□□□□ -2.3
SOX2P48431 AC103810.7-201ENST00000607821 91 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 307.3 ms