Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC068339.1-201ENST00000526965 141 ntBASIC1.62□□□□□ -2.15
CCDC9Q9Y3X0 MIR3163-201ENST00000581592 73 ntBASIC1.62□□□□□ -2.15
CCDC9Q9Y3X0 MIR588-201ENST00000384900 83 ntBASIC1.61□□□□□ -2.15
CCDC9Q9Y3X0 MT-TI-201ENST00000387365 69 ntBASIC1.61□□□□□ -2.15
CCDC9Q9Y3X0 HSPE1P19-201ENST00000603327 295 ntBASIC1.61□□□□□ -2.15
CCDC9Q9Y3X0 SNORA22.1-201ENST00000362701 134 ntBASIC1.6□□□□□ -2.15
CCDC9Q9Y3X0 Y_RNA.78-201ENST00000362970 110 ntBASIC1.6□□□□□ -2.15
CCDC9Q9Y3X0 MIR548D2-201ENST00000384955 97 ntBASIC1.6□□□□□ -2.15
CCDC9Q9Y3X0 MIR5000-201ENST00000577717 103 ntBASIC1.6□□□□□ -2.15
CCDC9Q9Y3X0 MIR7974-201ENST00000615835 79 ntBASIC1.6□□□□□ -2.15
CCDC9Q9Y3X0 Y_RNA.818-201ENST00000618813 71 ntBASIC1.6□□□□□ -2.15
CCDC9Q9Y3X0 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
CCDC9Q9Y3X0 MIR1-1-201ENST00000362147 71 ntBASIC1.59□□□□□ -2.15
CCDC9Q9Y3X0 Y_RNA.344-201ENST00000365381 112 ntBASIC1.59□□□□□ -2.15
CCDC9Q9Y3X0 RNU6-1104P-201ENST00000384723 104 ntBASIC1.59□□□□□ -2.15
CCDC9Q9Y3X0 MIR590-201ENST00000385008 97 ntBASIC1.59□□□□□ -2.15
CCDC9Q9Y3X0 SNORD89-201ENST00000390981 114 ntBASIC1.59□□□□□ -2.15
CCDC9Q9Y3X0 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC9Q9Y3X0 snoU13.2-201ENST00000459201 104 ntBASIC1.59□□□□□ -2.15
CCDC9Q9Y3X0 RNU2-35P-201ENST00000516446 142 ntBASIC1.59□□□□□ -2.15
CCDC9Q9Y3X0 AC022523.2-201ENST00000561045 150 ntBASIC1.59□□□□□ -2.15
CCDC9Q9Y3X0 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.16
CCDC9Q9Y3X0 Y_RNA.178-201ENST00000363832 102 ntBASIC1.58□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-1131P-201ENST00000364955 107 ntBASIC1.58□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-294P-201ENST00000364999 102 ntBASIC1.58□□□□□ -2.16
CCDC9Q9Y3X0 U7.7-201ENST00000459276 60 ntBASIC1.58□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-158P-201ENST00000517104 100 ntBASIC1.58□□□□□ -2.16
CCDC9Q9Y3X0 MIR6740-201ENST00000618268 113 ntBASIC1.58□□□□□ -2.16
CCDC9Q9Y3X0 AL162726.3-218ENST00000636401 95 ntBASIC1.58□□□□□ -2.16
CCDC9Q9Y3X0 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 SNORD73B-201ENST00000364394 72 ntBASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-934P-201ENST00000365154 107 ntBASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 MIR100-201ENST00000385259 80 ntBASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-1165P-201ENST00000410119 107 ntBASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 MIR1912-201ENST00000410389 80 ntBASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 AL022718.1-201ENST00000412004 84 ntBASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-904P-201ENST00000516206 101 ntBASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-109P-201ENST00000516364 107 ntBASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-184P-201ENST00000516514 107 ntBASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 RNU7-6P-201ENST00000516845 62 ntBASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 AC141557.1-201ENST00000540982 400 ntBASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.57□□□□□ -2.16
CCDC9Q9Y3X0 Y_RNA.558-201ENST00000384685 113 ntBASIC1.56□□□□□ -2.16
CCDC9Q9Y3X0 RNA5SP237-201ENST00000410414 113 ntBASIC1.56□□□□□ -2.16
CCDC9Q9Y3X0 SNORA19.1-201ENST00000410656 129 ntBASIC1.56□□□□□ -2.16
CCDC9Q9Y3X0 RNA5SP144-201ENST00000410846 116 ntBASIC1.56□□□□□ -2.16
CCDC9Q9Y3X0 SNORD83.1-201ENST00000411362 77 ntBASIC1.56□□□□□ -2.16
CCDC9Q9Y3X0 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.56□□□□□ -2.16
CCDC9Q9Y3X0 RPL39P25-201ENST00000449384 154 ntBASIC1.56□□□□□ -2.16
CCDC9Q9Y3X0 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.56□□□□□ -2.16
CCDC9Q9Y3X0 RNA5SP255-201ENST00000516370 107 ntBASIC1.56□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-1110P-201ENST00000516462 101 ntBASIC1.56□□□□□ -2.16
CCDC9Q9Y3X0 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.56□□□□□ -2.16
CCDC9Q9Y3X0 MIR2052-201ENST00000636055 55 ntBASIC1.56□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-49P-201ENST00000384256 107 ntBASIC1.55□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-816P-201ENST00000390914 107 ntBASIC1.55□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-1268P-201ENST00000391214 107 ntBASIC1.55□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-1239P-201ENST00000391310 107 ntBASIC1.55□□□□□ -2.16
CCDC9Q9Y3X0 MIR1827-201ENST00000408549 66 ntBASIC1.55□□□□□ -2.16
CCDC9Q9Y3X0 MTATP8P2-201ENST00000435212 202 ntBASIC1.55□□□□□ -2.16
CCDC9Q9Y3X0 AC068338.1-201ENST00000565567 176 ntBASIC1.55□□□□□ -2.16
CCDC9Q9Y3X0 MIR6841-201ENST00000637129 72 ntBASIC1.55□□□□□ -2.16
CCDC9Q9Y3X0 Y_RNA.220-201ENST00000364244 109 ntBASIC1.54□□□□□ -2.16
CCDC9Q9Y3X0 MIR488-201ENST00000365739 83 ntBASIC1.54□□□□□ -2.16
CCDC9Q9Y3X0 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.54□□□□□ -2.16
CCDC9Q9Y3X0 MIR18B-201ENST00000454574 71 ntBASIC1.54□□□□□ -2.16
CCDC9Q9Y3X0 snoU13.21-201ENST00000459368 105 ntBASIC1.54□□□□□ -2.16
CCDC9Q9Y3X0 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.54□□□□□ -2.16
CCDC9Q9Y3X0 AC004812.1-201ENST00000540773 146 ntBASIC1.54□□□□□ -2.16
CCDC9Q9Y3X0 MIR4771-2-201ENST00000577758 74 ntBASIC1.54□□□□□ -2.16
CCDC9Q9Y3X0 AC025627.3-201ENST00000582078 182 ntBASIC1.54□□□□□ -2.16
CCDC9Q9Y3X0 MIR4771-1-201ENST00000582617 74 ntBASIC1.54□□□□□ -2.16
CCDC9Q9Y3X0 AC087741.2-201ENST00000619415 172 ntBASIC1.54□□□□□ -2.16
CCDC9Q9Y3X0 Y_RNA.93-201ENST00000363066 109 ntBASIC1.53□□□□□ -2.16
CCDC9Q9Y3X0 RNU4-36P-201ENST00000364294 144 ntBASIC1.53□□□□□ -2.16
CCDC9Q9Y3X0 Y_RNA.299-201ENST00000364973 94 ntBASIC1.53□□□□□ -2.16
CCDC9Q9Y3X0 Y_RNA.507-201ENST00000384500 99 ntBASIC1.53□□□□□ -2.16
CCDC9Q9Y3X0 Y_RNA.531-201ENST00000384589 121 ntBASIC1.53□□□□□ -2.16
CCDC9Q9Y3X0 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.16
CCDC9Q9Y3X0 RPS26P5-201ENST00000418544 335 ntBASIC1.53□□□□□ -2.16
CCDC9Q9Y3X0 AL512326.2-201ENST00000426359 151 ntBASIC1.53□□□□□ -2.16
CCDC9Q9Y3X0 RNU6-844P-201ENST00000517175 102 ntBASIC1.53□□□□□ -2.16
CCDC9Q9Y3X0 DEFB131E-201ENST00000532329 154 ntBASIC1.53□□□□□ -2.16
CCDC9Q9Y3X0 SNORD115-19-201ENST00000363098 82 ntBASIC1.52□□□□□ -2.17
CCDC9Q9Y3X0 Y_RNA.107-201ENST00000363190 121 ntBASIC1.52□□□□□ -2.17
CCDC9Q9Y3X0 SNORD115-18-201ENST00000363293 82 ntBASIC1.52□□□□□ -2.17
CCDC9Q9Y3X0 SNORD115-17-201ENST00000364612 82 ntBASIC1.52□□□□□ -2.17
CCDC9Q9Y3X0 SNORA26.2-201ENST00000390922 122 ntBASIC1.52□□□□□ -2.17
CCDC9Q9Y3X0 RNY4P29-201ENST00000410801 97 ntBASIC1.52□□□□□ -2.17
CCDC9Q9Y3X0 AC113410.1-201ENST00000505029 247 ntBASIC1.52□□□□□ -2.17
CCDC9Q9Y3X0 FAM71BP1-201ENST00000604431 523 ntBASIC1.52□□□□□ -2.17
CCDC9Q9Y3X0 AC211469.2-201ENST00000605461 205 ntBASIC1.52□□□□□ -2.17
CCDC9Q9Y3X0 AL442128.1-201ENST00000615151 90 ntBASIC1.52□□□□□ -2.17
CCDC9Q9Y3X0 Y_RNA.10-201ENST00000362371 110 ntBASIC1.51□□□□□ -2.17
CCDC9Q9Y3X0 RNY3P2-201ENST00000362918 102 ntBASIC1.51□□□□□ -2.17
CCDC9Q9Y3X0 MT-TF-201ENST00000387314 71 ntBASIC1.51□□□□□ -2.17
CCDC9Q9Y3X0 MIR758-201ENST00000390227 88 ntBASIC1.51□□□□□ -2.17
CCDC9Q9Y3X0 RNU7-113P-201ENST00000459273 62 ntBASIC1.51□□□□□ -2.17
CCDC9Q9Y3X0 SCARNA23-201ENST00000516060 130 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 186.6 ms