Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 SNORD114-9-201ENST00000364370 72 ntBASIC0.03□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.357-201ENST00000365487 109 ntBASIC0.03□□□□□ -2.4
VPS54Q9P1Q0 RNU6-1126P-201ENST00000384002 107 ntBASIC0.03□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.435-201ENST00000384095 112 ntBASIC0.03□□□□□ -2.4
VPS54Q9P1Q0 MIR760-201ENST00000390220 80 ntBASIC0.03□□□□□ -2.4
VPS54Q9P1Q0 RNU6-1307P-201ENST00000391012 103 ntBASIC0.03□□□□□ -2.4
VPS54Q9P1Q0 AC107027.2-201ENST00000512197 115 ntBASIC0.03□□□□□ -2.4
VPS54Q9P1Q0 AC138907.4-201ENST00000570107 226 ntBASIC0.03□□□□□ -2.4
VPS54Q9P1Q0 AC130289.1-201ENST00000577321 73 ntBASIC0.03□□□□□ -2.4
VPS54Q9P1Q0 AC021443.1-201ENST00000604478 211 ntBASIC0.03□□□□□ -2.4
VPS54Q9P1Q0 MIR6844-201ENST00000637122 62 ntBASIC0.03□□□□□ -2.4
VPS54Q9P1Q0 Y_RNA.56-201ENST00000362798 112 ntBASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 SNORD114-10-201ENST00000363409 72 ntBASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 RNU6-1020P-201ENST00000363684 107 ntBASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 Y_RNA.258-201ENST00000364613 105 ntBASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 RNU6-312P-201ENST00000364629 107 ntBASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 Y_RNA.337-201ENST00000365312 102 ntBASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 SNORA2A-201ENST00000383885 135 ntBASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 MIR1197-201ENST00000408818 88 ntBASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 MTND3P2-201ENST00000438452 342 ntBASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 RNU7-123P-201ENST00000515911 60 ntBASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 AC011603.4-201ENST00000611325 277 ntBASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 AC141273.2-201ENST00000618989 130 ntBASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.02□□□□□ -2.41
VPS54Q9P1Q0 RNU6-309P-201ENST00000364573 106 ntBASIC0.01□□□□□ -2.41
VPS54Q9P1Q0 Y_RNA.274-201ENST00000364714 101 ntBASIC0.01□□□□□ -2.41
VPS54Q9P1Q0 RNU6-1321P-201ENST00000390905 107 ntBASIC0.01□□□□□ -2.41
VPS54Q9P1Q0 MTATP6P21-201ENST00000440681 189 ntBASIC0.01□□□□□ -2.41
VPS54Q9P1Q0 RNU7-164P-201ENST00000459221 62 ntBASIC0.01□□□□□ -2.41
VPS54Q9P1Q0 Y_RNA.651-201ENST00000459380 103 ntBASIC0.01□□□□□ -2.41
VPS54Q9P1Q0 RNA5SP330-201ENST00000517096 96 ntBASIC0.01□□□□□ -2.41
VPS54Q9P1Q0 RNU7-161P-201ENST00000517289 62 ntBASIC0.01□□□□□ -2.41
VPS54Q9P1Q0 MIR6779-201ENST00000617283 64 ntBASIC0.01□□□□□ -2.41
VPS54Q9P1Q0 SNORA42.1-201ENST00000363515 137 ntBASIC0□□□□□ -2.41
VPS54Q9P1Q0 Y_RNA.233-201ENST00000364407 101 ntBASIC0□□□□□ -2.41
VPS54Q9P1Q0 SNORA75.5-201ENST00000391291 81 ntBASIC0□□□□□ -2.41
VPS54Q9P1Q0 RPL39P34-201ENST00000477141 156 ntBASIC0□□□□□ -2.41
VPS54Q9P1Q0 Y_RNA.686-201ENST00000516548 134 ntBASIC0□□□□□ -2.41
VPS54Q9P1Q0 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0□□□□□ -2.41
VPS54Q9P1Q0 SNORA70.25-201ENST00000612741 95 ntBASIC0□□□□□ -2.41
VPS54Q9P1Q0 SNORD114-16-201ENST00000363044 70 ntBASIC-0.01□□□□□ -2.41
VPS54Q9P1Q0 RNA5SP325-201ENST00000363756 130 ntBASIC-0.01□□□□□ -2.41
VPS54Q9P1Q0 RNU6-726P-201ENST00000364680 107 ntBASIC-0.01□□□□□ -2.41
VPS54Q9P1Q0 Y_RNA.466-201ENST00000384294 113 ntBASIC-0.01□□□□□ -2.41
VPS54Q9P1Q0 RNU6-196P-201ENST00000384315 107 ntBASIC-0.01□□□□□ -2.41
VPS54Q9P1Q0 RNU6-1104P-201ENST00000384723 104 ntBASIC-0.01□□□□□ -2.41
VPS54Q9P1Q0 RNA5SP63-201ENST00000391225 112 ntBASIC-0.01□□□□□ -2.41
VPS54Q9P1Q0 RNU7-104P-201ENST00000459398 79 ntBASIC-0.01□□□□□ -2.41
VPS54Q9P1Q0 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC-0.01□□□□□ -2.41
VPS54Q9P1Q0 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-0.01□□□□□ -2.41
VPS54Q9P1Q0 AC098479.1-201ENST00000609225 154 ntBASIC-0.01□□□□□ -2.41
VPS54Q9P1Q0 RNA5SP128-201ENST00000365305 116 ntBASIC-0.02□□□□□ -2.41
VPS54Q9P1Q0 MIR593-201ENST00000384856 100 ntBASIC-0.02□□□□□ -2.41
VPS54Q9P1Q0 MIR548H2-201ENST00000408874 88 ntBASIC-0.02□□□□□ -2.41
VPS54Q9P1Q0 RNU4-69P-201ENST00000410677 143 ntBASIC-0.02□□□□□ -2.41
VPS54Q9P1Q0 RNU6-848P-201ENST00000515948 107 ntBASIC-0.02□□□□□ -2.41
VPS54Q9P1Q0 RNU6-617P-201ENST00000516147 107 ntBASIC-0.02□□□□□ -2.41
VPS54Q9P1Q0 RNU6-473P-201ENST00000516164 107 ntBASIC-0.02□□□□□ -2.41
VPS54Q9P1Q0 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.02□□□□□ -2.41
VPS54Q9P1Q0 MIR4500-201ENST00000579472 76 ntBASIC-0.02□□□□□ -2.41
VPS54Q9P1Q0 AC009779.6-201ENST00000603972 165 ntBASIC-0.02□□□□□ -2.41
VPS54Q9P1Q0 AC108081.1-201ENST00000604358 221 ntBASIC-0.02□□□□□ -2.41
VPS54Q9P1Q0 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.03□□□□□ -2.41
VPS54Q9P1Q0 Y_RNA.298-201ENST00000364960 107 ntBASIC-0.03□□□□□ -2.41
VPS54Q9P1Q0 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.03□□□□□ -2.41
VPS54Q9P1Q0 Y_RNA.448-201ENST00000384185 108 ntBASIC-0.03□□□□□ -2.41
VPS54Q9P1Q0 RNU6-429P-201ENST00000384582 108 ntBASIC-0.03□□□□□ -2.41
VPS54Q9P1Q0 MIR206-201ENST00000384872 86 ntBASIC-0.03□□□□□ -2.41
VPS54Q9P1Q0 BX276092.1-201ENST00000427368 251 ntBASIC-0.03□□□□□ -2.41
VPS54Q9P1Q0 AC244505.6-201ENST00000452829 130 ntBASIC-0.03□□□□□ -2.41
VPS54Q9P1Q0 TRAJ51-201ENST00000504127 63 ntBASIC-0.03□□□□□ -2.41
VPS54Q9P1Q0 RNU5E-3P-201ENST00000515913 68 ntBASIC-0.03□□□□□ -2.41
VPS54Q9P1Q0 AC138869.1-201ENST00000568623 124 ntBASIC-0.03□□□□□ -2.41
VPS54Q9P1Q0 AC099654.10-201ENST00000640395 161 ntBASIC-0.03□□□□□ -2.41
VPS54Q9P1Q0 SNORD18B-201ENST00000365659 72 ntBASIC-0.04□□□□□ -2.42
VPS54Q9P1Q0 Y_RNA.452-201ENST00000384202 108 ntBASIC-0.04□□□□□ -2.42
VPS54Q9P1Q0 RNU6-239P-201ENST00000390990 99 ntBASIC-0.04□□□□□ -2.42
VPS54Q9P1Q0 MIR548L-201ENST00000408303 86 ntBASIC-0.04□□□□□ -2.42
VPS54Q9P1Q0 MIR3646-201ENST00000578301 84 ntBASIC-0.04□□□□□ -2.42
VPS54Q9P1Q0 MIR548H5-201ENST00000580314 60 ntBASIC-0.04□□□□□ -2.42
VPS54Q9P1Q0 MIR371B-201ENST00000638082 66 ntBASIC-0.04□□□□□ -2.42
VPS54Q9P1Q0 MIR145-201ENST00000384967 88 ntBASIC-0.05□□□□□ -2.42
VPS54Q9P1Q0 MIR501-201ENST00000390204 84 ntBASIC-0.05□□□□□ -2.42
VPS54Q9P1Q0 SNORD37.2-201ENST00000391075 66 ntBASIC-0.05□□□□□ -2.42
VPS54Q9P1Q0 Y_RNA.690-201ENST00000516603 95 ntBASIC-0.05□□□□□ -2.42
VPS54Q9P1Q0 IGHVII-40-1-201ENST00000517316 58 ntBASIC-0.05□□□□□ -2.42
VPS54Q9P1Q0 RNA5SP403-201ENST00000363598 108 ntBASIC-0.06□□□□□ -2.42
VPS54Q9P1Q0 RNU4-84P-201ENST00000364200 139 ntBASIC-0.06□□□□□ -2.42
VPS54Q9P1Q0 Y_RNA.251-201ENST00000364551 99 ntBASIC-0.06□□□□□ -2.42
VPS54Q9P1Q0 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.06□□□□□ -2.42
VPS54Q9P1Q0 RNU6-616P-201ENST00000384353 107 ntBASIC-0.06□□□□□ -2.42
VPS54Q9P1Q0 MIR7-2-201ENST00000384970 110 ntBASIC-0.06□□□□□ -2.42
VPS54Q9P1Q0 MIR610-201ENST00000385139 96 ntBASIC-0.06□□□□□ -2.42
VPS54Q9P1Q0 RNU6-269P-201ENST00000391077 97 ntBASIC-0.06□□□□□ -2.42
VPS54Q9P1Q0 Y_RNA.584-201ENST00000391090 114 ntBASIC-0.06□□□□□ -2.42
VPS54Q9P1Q0 AL603914.1-201ENST00000401964 204 ntBASIC-0.06□□□□□ -2.42
VPS54Q9P1Q0 RNU7-48P-201ENST00000458875 63 ntBASIC-0.06□□□□□ -2.42
VPS54Q9P1Q0 RNU7-121P-201ENST00000516604 62 ntBASIC-0.06□□□□□ -2.42
VPS54Q9P1Q0 RNY4P20-201ENST00000516678 93 ntBASIC-0.06□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 229.1 ms