Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNU6-275P-201ENST00000364910 107 ntBASIC-0.26□□□□□ -2.45
RFX3P48380 RNY4P28-201ENST00000365281 93 ntBASIC-0.26□□□□□ -2.45
RFX3P48380 Y_RNA.357-201ENST00000365487 109 ntBASIC-0.26□□□□□ -2.45
RFX3P48380 SNORA32-201ENST00000384072 121 ntBASIC-0.26□□□□□ -2.45
RFX3P48380 MIR214-201ENST00000385214 110 ntBASIC-0.26□□□□□ -2.45
RFX3P48380 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-0.26□□□□□ -2.45
RFX3P48380 Y_RNA.720-201ENST00000517166 92 ntBASIC-0.26□□□□□ -2.45
RFX3P48380 MIR5589-201ENST00000579442 60 ntBASIC-0.26□□□□□ -2.45
RFX3P48380 MIR548AE2-201ENST00000583456 67 ntBASIC-0.26□□□□□ -2.45
RFX3P48380 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.26□□□□□ -2.45
RFX3P48380 Y_RNA.52-201ENST00000362760 96 ntBASIC-0.27□□□□□ -2.45
RFX3P48380 Y_RNA.182-201ENST00000363880 111 ntBASIC-0.27□□□□□ -2.45
RFX3P48380 RNU6-690P-201ENST00000365242 106 ntBASIC-0.27□□□□□ -2.45
RFX3P48380 Y_RNA.571-201ENST00000384753 98 ntBASIC-0.27□□□□□ -2.45
RFX3P48380 RNU6-493P-201ENST00000391321 108 ntBASIC-0.27□□□□□ -2.45
RFX3P48380 RNA5SP236-201ENST00000516169 116 ntBASIC-0.27□□□□□ -2.45
RFX3P48380 AL359881.1-201ENST00000602916 267 ntBASIC-0.27□□□□□ -2.45
RFX3P48380 RNA5SP98-201ENST00000363158 137 ntBASIC-0.28□□□□□ -2.45
RFX3P48380 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.28□□□□□ -2.45
RFX3P48380 RNU6-449P-201ENST00000383914 107 ntBASIC-0.28□□□□□ -2.45
RFX3P48380 Y_RNA.521-201ENST00000384560 114 ntBASIC-0.28□□□□□ -2.45
RFX3P48380 MIR635-201ENST00000384830 98 ntBASIC-0.28□□□□□ -2.45
RFX3P48380 MTATP6P21-201ENST00000440681 189 ntBASIC-0.28□□□□□ -2.45
RFX3P48380 RNY3P16-201ENST00000516338 101 ntBASIC-0.28□□□□□ -2.45
RFX3P48380 IGHVII-40-1-201ENST00000517316 58 ntBASIC-0.28□□□□□ -2.45
RFX3P48380 MIR4677-201ENST00000584153 80 ntBASIC-0.28□□□□□ -2.45
RFX3P48380 AC006504.6-201ENST00000590142 199 ntBASIC-0.28□□□□□ -2.45
RFX3P48380 uc_338.28-201ENST00000612082 187 ntBASIC-0.28□□□□□ -2.45
RFX3P48380 SNORA18.1-201ENST00000363418 128 ntBASIC-0.29□□□□□ -2.46
RFX3P48380 RNU6-46P-201ENST00000383860 107 ntBASIC-0.29□□□□□ -2.46
RFX3P48380 SNORA75.1-201ENST00000391130 148 ntBASIC-0.29□□□□□ -2.46
RFX3P48380 MTATP8P1-201ENST00000467115 207 ntBASIC-0.29□□□□□ -2.46
RFX3P48380 RNU6-180P-201ENST00000516697 61 ntBASIC-0.29□□□□□ -2.46
RFX3P48380 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.29□□□□□ -2.46
RFX3P48380 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.29□□□□□ -2.46
RFX3P48380 MIR6514-201ENST00000622549 70 ntBASIC-0.29□□□□□ -2.46
RFX3P48380 Y_RNA.75-201ENST00000362927 97 ntBASIC-0.3□□□□□ -2.46
RFX3P48380 RNU6-1336P-201ENST00000383886 109 ntBASIC-0.3□□□□□ -2.46
RFX3P48380 MIR548F4-201ENST00000408515 105 ntBASIC-0.3□□□□□ -2.46
RFX3P48380 Z95118.1-201ENST00000421372 247 ntBASIC-0.3□□□□□ -2.46
RFX3P48380 AC097635.1-201ENST00000450678 155 ntBASIC-0.3□□□□□ -2.46
RFX3P48380 MIR4645-201ENST00000583158 77 ntBASIC-0.3□□□□□ -2.46
RFX3P48380 AC105081.1-201ENST00000617727 106 ntBASIC-0.3□□□□□ -2.46
RFX3P48380 RNU6-509P-201ENST00000363519 107 ntBASIC-0.31□□□□□ -2.46
RFX3P48380 SNORD114-12-201ENST00000365400 75 ntBASIC-0.31□□□□□ -2.46
RFX3P48380 Y_RNA.549-201ENST00000384657 102 ntBASIC-0.31□□□□□ -2.46
RFX3P48380 MIR548I2-201ENST00000408348 149 ntBASIC-0.31□□□□□ -2.46
RFX3P48380 HMGN2P22-201ENST00000427588 175 ntBASIC-0.31□□□□□ -2.46
RFX3P48380 RNU2-60P-201ENST00000517290 128 ntBASIC-0.31□□□□□ -2.46
RFX3P48380 MIR4636-201ENST00000582271 80 ntBASIC-0.31□□□□□ -2.46
RFX3P48380 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.31□□□□□ -2.46
RFX3P48380 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 Y_RNA.288-201ENST00000364854 92 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 Y_RNA.396-201ENST00000383949 103 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 RNU6-1160P-201ENST00000384546 104 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 Y_RNA.562-201ENST00000384695 113 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 MIR599-201ENST00000385069 95 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 SNORD58.1-201ENST00000391313 66 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 RNU4-69P-201ENST00000410677 143 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 Y_RNA.626-201ENST00000411288 95 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 SNORD127-201ENST00000458892 86 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 SNORD4A-201ENST00000459174 72 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 MIR1270-201ENST00000459320 83 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 RNU2-35P-201ENST00000516446 142 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 MIR4308-201ENST00000580634 81 ntBASIC-0.32□□□□□ -2.46
RFX3P48380 Y_RNA.11-201ENST00000362375 109 ntBASIC-0.33□□□□□ -2.46
RFX3P48380 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.33□□□□□ -2.46
RFX3P48380 Y_RNA.294-201ENST00000364916 102 ntBASIC-0.33□□□□□ -2.46
RFX3P48380 MIR1265-201ENST00000408444 86 ntBASIC-0.33□□□□□ -2.46
RFX3P48380 RNU2-38P-201ENST00000410856 79 ntBASIC-0.33□□□□□ -2.46
RFX3P48380 RNA5SP484-201ENST00000458857 111 ntBASIC-0.33□□□□□ -2.46
RFX3P48380 RNU7-48P-201ENST00000458875 63 ntBASIC-0.33□□□□□ -2.46
RFX3P48380 RNU7-74P-201ENST00000459104 62 ntBASIC-0.33□□□□□ -2.46
RFX3P48380 CR383656.4-201ENST00000546909 122 ntBASIC-0.33□□□□□ -2.46
RFX3P48380 NAMPTP3-201ENST00000569273 224 ntBASIC-0.33□□□□□ -2.46
RFX3P48380 AC138907.4-201ENST00000570107 226 ntBASIC-0.33□□□□□ -2.46
RFX3P48380 AC021443.1-201ENST00000604478 211 ntBASIC-0.33□□□□□ -2.46
RFX3P48380 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.33□□□□□ -2.46
RFX3P48380 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.34□□□□□ -2.46
RFX3P48380 RNU6-818P-201ENST00000364837 108 ntBASIC-0.34□□□□□ -2.46
RFX3P48380 MIR519A1-201ENST00000385257 85 ntBASIC-0.34□□□□□ -2.46
RFX3P48380 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.34□□□□□ -2.46
RFX3P48380 TRAJ51-201ENST00000504127 63 ntBASIC-0.34□□□□□ -2.46
RFX3P48380 AL117187.1-201ENST00000555482 181 ntBASIC-0.34□□□□□ -2.46
RFX3P48380 MIR4500-201ENST00000579472 76 ntBASIC-0.34□□□□□ -2.46
RFX3P48380 U6.106-201ENST00000636360 105 ntBASIC-0.34□□□□□ -2.46
RFX3P48380 Y_RNA.556-201ENST00000384677 113 ntBASIC-0.35□□□□□ -2.47
RFX3P48380 SNORD77B-201ENST00000391112 67 ntBASIC-0.35□□□□□ -2.47
RFX3P48380 SNORA75.5-201ENST00000391291 81 ntBASIC-0.35□□□□□ -2.47
RFX3P48380 SNORD110-201ENST00000408189 75 ntBASIC-0.35□□□□□ -2.47
RFX3P48380 AC006210.1-201ENST00000424882 111 ntBASIC-0.35□□□□□ -2.47
RFX3P48380 BX276092.1-201ENST00000427368 251 ntBASIC-0.35□□□□□ -2.47
RFX3P48380 RNU7-164P-201ENST00000459221 62 ntBASIC-0.35□□□□□ -2.47
RFX3P48380 MIR4802-201ENST00000581881 80 ntBASIC-0.35□□□□□ -2.47
RFX3P48380 MIR6086-201ENST00000638065 55 ntBASIC-0.35□□□□□ -2.47
RFX3P48380 MIR148A-201ENST00000362215 68 ntBASIC-0.36□□□□□ -2.47
RFX3P48380 Y_RNA.20-201ENST00000362479 113 ntBASIC-0.36□□□□□ -2.47
RFX3P48380 Y_RNA.145-201ENST00000363527 102 ntBASIC-0.36□□□□□ -2.47
RFX3P48380 Y_RNA.149-201ENST00000363558 117 ntBASIC-0.36□□□□□ -2.47
RFX3P48380 RNU6-865P-201ENST00000364772 107 ntBASIC-0.36□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms