Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 Y_RNA.353-201ENST00000365440 108 ntBASIC1.17□□□□□ -2.22
PCDHA1Q9Y5I3 SNORD83.1-201ENST00000411362 77 ntBASIC1.17□□□□□ -2.22
PCDHA1Q9Y5I3 AC067940.1-201ENST00000458411 300 ntBASIC1.17□□□□□ -2.22
PCDHA1Q9Y5I3 RNU6-313P-201ENST00000516317 112 ntBASIC1.17□□□□□ -2.22
PCDHA1Q9Y5I3 MIR6767-201ENST00000637302 66 ntBASIC1.17□□□□□ -2.22
PCDHA1Q9Y5I3 AL391516.1-201ENST00000554380 2449 ntBASIC1.16□□□□□ -2.22
PCDHA1Q9Y5I3 RNU6-369P-201ENST00000362515 102 ntBASIC1.16□□□□□ -2.22
PCDHA1Q9Y5I3 SNORD114-10-201ENST00000363409 72 ntBASIC1.16□□□□□ -2.22
PCDHA1Q9Y5I3 RNU4-38P-201ENST00000364472 129 ntBASIC1.16□□□□□ -2.22
PCDHA1Q9Y5I3 Y_RNA.355-201ENST00000365462 98 ntBASIC1.16□□□□□ -2.22
PCDHA1Q9Y5I3 RNU6-1154P-201ENST00000391001 104 ntBASIC1.16□□□□□ -2.22
PCDHA1Q9Y5I3 MIR1827-201ENST00000408549 66 ntBASIC1.16□□□□□ -2.22
PCDHA1Q9Y5I3 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.16□□□□□ -2.22
PCDHA1Q9Y5I3 RNU6-735P-201ENST00000410612 107 ntBASIC1.16□□□□□ -2.22
PCDHA1Q9Y5I3 RNU2-51P-201ENST00000410708 197 ntBASIC1.16□□□□□ -2.22
PCDHA1Q9Y5I3 SNORD124-201ENST00000459577 104 ntBASIC1.16□□□□□ -2.22
PCDHA1Q9Y5I3 MIR1-1-201ENST00000362147 71 ntBASIC1.15□□□□□ -2.23
PCDHA1Q9Y5I3 SNORA22C-201ENST00000384614 134 ntBASIC1.15□□□□□ -2.23
PCDHA1Q9Y5I3 MIR520E-201ENST00000384867 87 ntBASIC1.15□□□□□ -2.23
PCDHA1Q9Y5I3 MIR548D2-201ENST00000384955 97 ntBASIC1.15□□□□□ -2.23
PCDHA1Q9Y5I3 U8.15-201ENST00000390947 134 ntBASIC1.15□□□□□ -2.23
PCDHA1Q9Y5I3 RPS29P28-201ENST00000446439 141 ntBASIC1.15□□□□□ -2.23
PCDHA1Q9Y5I3 RNU7-185P-201ENST00000459215 60 ntBASIC1.15□□□□□ -2.23
PCDHA1Q9Y5I3 U7.7-201ENST00000459276 60 ntBASIC1.15□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-1110P-201ENST00000516462 101 ntBASIC1.15□□□□□ -2.23
PCDHA1Q9Y5I3 FAM71BP1-201ENST00000604431 523 ntBASIC1.15□□□□□ -2.23
PCDHA1Q9Y5I3 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.15□□□□□ -2.23
PCDHA1Q9Y5I3 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.14□□□□□ -2.23
PCDHA1Q9Y5I3 Y_RNA.508-201ENST00000384502 114 ntBASIC1.14□□□□□ -2.23
PCDHA1Q9Y5I3 Y_RNA.649-201ENST00000459077 103 ntBASIC1.14□□□□□ -2.23
PCDHA1Q9Y5I3 SNORD67.1-201ENST00000516618 108 ntBASIC1.14□□□□□ -2.23
PCDHA1Q9Y5I3 RNU7-137P-201ENST00000516788 62 ntBASIC1.14□□□□□ -2.23
PCDHA1Q9Y5I3 MIR4771-2-201ENST00000577758 74 ntBASIC1.14□□□□□ -2.23
PCDHA1Q9Y5I3 MIR4679-2-201ENST00000578358 77 ntBASIC1.14□□□□□ -2.23
PCDHA1Q9Y5I3 MIR4771-1-201ENST00000582617 74 ntBASIC1.14□□□□□ -2.23
PCDHA1Q9Y5I3 AL670379.3-201ENST00000605040 251 ntBASIC1.14□□□□□ -2.23
PCDHA1Q9Y5I3 AL136317.1-201ENST00000612653 226 ntBASIC1.14□□□□□ -2.23
PCDHA1Q9Y5I3 U2.22-201ENST00000636441 106 ntBASIC1.14□□□□□ -2.23
PCDHA1Q9Y5I3 AC023934.1-201ENST00000574529 2389 ntBASIC1.13□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-834P-201ENST00000362367 110 ntBASIC1.13□□□□□ -2.23
PCDHA1Q9Y5I3 RNU1-36P-201ENST00000365130 165 ntBASIC1.13□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-1081P-201ENST00000384537 107 ntBASIC1.13□□□□□ -2.23
PCDHA1Q9Y5I3 AC096949.1-201ENST00000412047 152 ntBASIC1.13□□□□□ -2.23
PCDHA1Q9Y5I3 RPL39P25-201ENST00000449384 154 ntBASIC1.13□□□□□ -2.23
PCDHA1Q9Y5I3 SNORD33.1-201ENST00000516213 88 ntBASIC1.13□□□□□ -2.23
PCDHA1Q9Y5I3 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.13□□□□□ -2.23
PCDHA1Q9Y5I3 AL359881.1-201ENST00000602916 267 ntBASIC1.13□□□□□ -2.23
PCDHA1Q9Y5I3 AL078603.1-201ENST00000603824 313 ntBASIC1.13□□□□□ -2.23
PCDHA1Q9Y5I3 AC020891.4-201ENST00000605745 93 ntBASIC1.13□□□□□ -2.23
PCDHA1Q9Y5I3 MIR125B2-201ENST00000385128 89 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 MIR548A3-201ENST00000385297 97 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 MIR942-201ENST00000401111 86 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 MIR548I2-201ENST00000408348 149 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 MIR1257-201ENST00000408490 117 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-447P-201ENST00000410293 104 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-1118P-201ENST00000410382 104 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-1076P-201ENST00000410397 104 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-355P-201ENST00000410427 104 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-791P-201ENST00000410467 104 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-705P-201ENST00000410601 104 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-1100P-201ENST00000410691 104 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-860P-201ENST00000410860 104 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-1217P-201ENST00000411276 104 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-785P-201ENST00000411324 104 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 MIR4676-201ENST00000583078 72 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 U6.90-201ENST00000614007 104 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 U6.70-201ENST00000620287 104 ntBASIC1.12□□□□□ -2.23
PCDHA1Q9Y5I3 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.11□□□□□ -2.23
PCDHA1Q9Y5I3 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-616P-201ENST00000384353 107 ntBASIC1.11□□□□□ -2.23
PCDHA1Q9Y5I3 MIR100-201ENST00000385259 80 ntBASIC1.11□□□□□ -2.23
PCDHA1Q9Y5I3 SNORD93-201ENST00000408813 74 ntBASIC1.11□□□□□ -2.23
PCDHA1Q9Y5I3 RPS29P1-201ENST00000465274 159 ntBASIC1.11□□□□□ -2.23
PCDHA1Q9Y5I3 AC007012.1-201ENST00000567192 175 ntBASIC1.11□□□□□ -2.23
PCDHA1Q9Y5I3 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.11□□□□□ -2.23
PCDHA1Q9Y5I3 MIR206-201ENST00000384872 86 ntBASIC1.1□□□□□ -2.23
PCDHA1Q9Y5I3 MIR4804-201ENST00000581683 73 ntBASIC1.1□□□□□ -2.23
PCDHA1Q9Y5I3 Y_RNA.773-201ENST00000607168 90 ntBASIC1.1□□□□□ -2.23
PCDHA1Q9Y5I3 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.1□□□□□ -2.23
PCDHA1Q9Y5I3 AL589743.1-201ENST00000551932 2712 ntBASIC1.1□□□□□ -2.23
PCDHA1Q9Y5I3 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 SNORD115-35-201ENST00000365122 82 ntBASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 Y_RNA.344-201ENST00000365381 112 ntBASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 Y_RNA.362-201ENST00000365518 110 ntBASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 SNORD89-201ENST00000390981 114 ntBASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 Y_RNA.588-201ENST00000391254 102 ntBASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 MIR938-201ENST00000401216 83 ntBASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 RNU7-56P-201ENST00000458744 62 ntBASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 RPL39P34-201ENST00000477141 156 ntBASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 RNU7-2P-201ENST00000516096 62 ntBASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 RNA5SP220-201ENST00000516298 104 ntBASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 RNA5SP255-201ENST00000516370 107 ntBASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 RNU6-977P-201ENST00000516411 103 ntBASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 AC025627.3-201ENST00000582078 182 ntBASIC1.09□□□□□ -2.23
PCDHA1Q9Y5I3 MIR373-201ENST00000362273 69 ntBASIC1.08□□□□□ -2.24
PCDHA1Q9Y5I3 Y_RNA.118-201ENST00000363300 101 ntBASIC1.08□□□□□ -2.24
PCDHA1Q9Y5I3 RNU6-42P-201ENST00000384165 107 ntBASIC1.08□□□□□ -2.24
PCDHA1Q9Y5I3 RNU6-1144P-201ENST00000384247 104 ntBASIC1.08□□□□□ -2.24
PCDHA1Q9Y5I3 MIR532-201ENST00000385025 91 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 204.9 ms