Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU6-640P-201ENST00000363693 105 ntBASIC2.26□□□□□ -2.05
CCDC87Q9NVE4 Y_RNA.377-201ENST00000365644 108 ntBASIC2.26□□□□□ -2.05
CCDC87Q9NVE4 RNU6-521P-201ENST00000516663 105 ntBASIC2.26□□□□□ -2.05
CCDC87Q9NVE4 MIR5582-201ENST00000579697 68 ntBASIC2.26□□□□□ -2.05
CCDC87Q9NVE4 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.26□□□□□ -2.05
CCDC87Q9NVE4 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC87Q9NVE4 SNORD115-35-201ENST00000365122 82 ntBASIC2.25□□□□□ -2.05
CCDC87Q9NVE4 RNU6-342P-201ENST00000384521 104 ntBASIC2.25□□□□□ -2.05
CCDC87Q9NVE4 MIR577-201ENST00000385196 96 ntBASIC2.25□□□□□ -2.05
CCDC87Q9NVE4 RNU6ATAC41P-201ENST00000408600 126 ntBASIC2.25□□□□□ -2.05
CCDC87Q9NVE4 RNY4P30-201ENST00000410216 95 ntBASIC2.25□□□□□ -2.05
CCDC87Q9NVE4 SNORA19.1-201ENST00000410656 129 ntBASIC2.25□□□□□ -2.05
CCDC87Q9NVE4 SNORA7.5-201ENST00000410672 110 ntBASIC2.25□□□□□ -2.05
CCDC87Q9NVE4 HMGN2P19-201ENST00000425149 265 ntBASIC2.25□□□□□ -2.05
CCDC87Q9NVE4 MIR3192-201ENST00000584920 77 ntBASIC2.25□□□□□ -2.05
CCDC87Q9NVE4 AL096861.1-201ENST00000610899 123 ntBASIC2.25□□□□□ -2.05
CCDC87Q9NVE4 MIR8063-201ENST00000621930 81 ntBASIC2.25□□□□□ -2.05
CCDC87Q9NVE4 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.25□□□□□ -2.05
CCDC87Q9NVE4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 MIR302D-201ENST00000362275 68 ntBASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 Y_RNA.107-201ENST00000363190 121 ntBASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 RNU6-396P-201ENST00000365369 105 ntBASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 RNU6-679P-201ENST00000391003 106 ntBASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 MTATP8P2-201ENST00000435212 202 ntBASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 RNU6-717P-201ENST00000459076 104 ntBASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 AL133373.1-201ENST00000497098 94 ntBASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 RNU7-79P-201ENST00000516082 62 ntBASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 RNU7-2P-201ENST00000516096 62 ntBASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 RNU6-109P-201ENST00000516364 107 ntBASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 RNU6-184P-201ENST00000516514 107 ntBASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 MIR3198-2-201ENST00000577868 80 ntBASIC2.24□□□□□ -2.05
CCDC87Q9NVE4 RNU6-1065P-201ENST00000384513 106 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 MIR605-201ENST00000385078 83 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 RNU6-447P-201ENST00000410293 104 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 RNU6-1118P-201ENST00000410382 104 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 RNU6-1076P-201ENST00000410397 104 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 RNU6-355P-201ENST00000410427 104 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 RNU6-791P-201ENST00000410467 104 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 RNU6-705P-201ENST00000410601 104 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 RNU6-1100P-201ENST00000410691 104 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 RNU6-860P-201ENST00000410860 104 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 RNU6-1217P-201ENST00000411276 104 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 RNU6-785P-201ENST00000411324 104 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 AC090844.1-201ENST00000422019 156 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 RPL31P63-201ENST00000422565 375 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 RPL30P7-201ENST00000479312 323 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 AC079140.2-201ENST00000506193 142 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 RNU11-2P-201ENST00000516898 142 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 MIR4448-201ENST00000584360 86 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 U6.90-201ENST00000614007 104 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 U6.70-201ENST00000620287 104 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 AL512310.12-203ENST00000640543 90 ntBASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
CCDC87Q9NVE4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC87Q9NVE4 RNU6-1313P-201ENST00000362622 102 ntBASIC2.22□□□□□ -2.05
CCDC87Q9NVE4 SNORD114-10-201ENST00000363409 72 ntBASIC2.22□□□□□ -2.05
CCDC87Q9NVE4 SNORA16.1-201ENST00000364597 132 ntBASIC2.22□□□□□ -2.05
CCDC87Q9NVE4 SNORD1A-201ENST00000364968 72 ntBASIC2.22□□□□□ -2.05
CCDC87Q9NVE4 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.22□□□□□ -2.05
CCDC87Q9NVE4 AC096720.1-201ENST00000604441 183 ntBASIC2.22□□□□□ -2.05
CCDC87Q9NVE4 PRELID3BP2-201ENST00000605362 201 ntBASIC2.22□□□□□ -2.05
CCDC87Q9NVE4 AL359851.1-201ENST00000569460 4997 ntBASIC2.21□□□□□ -2.06
CCDC87Q9NVE4 RNA5SP138-201ENST00000365098 114 ntBASIC2.21□□□□□ -2.06
CCDC87Q9NVE4 Y_RNA.327-201ENST00000365201 102 ntBASIC2.21□□□□□ -2.06
CCDC87Q9NVE4 RNU6-1201P-201ENST00000384227 107 ntBASIC2.21□□□□□ -2.06
CCDC87Q9NVE4 MIR1276-201ENST00000408707 83 ntBASIC2.21□□□□□ -2.06
CCDC87Q9NVE4 RNA5SP237-201ENST00000410414 113 ntBASIC2.21□□□□□ -2.06
CCDC87Q9NVE4 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC87Q9NVE4 Y_RNA.96-201ENST00000363092 109 ntBASIC2.2□□□□□ -2.06
CCDC87Q9NVE4 SNORD45B-201ENST00000364617 72 ntBASIC2.2□□□□□ -2.06
CCDC87Q9NVE4 MIR676-201ENST00000390702 67 ntBASIC2.2□□□□□ -2.06
CCDC87Q9NVE4 AC096949.1-201ENST00000412047 152 ntBASIC2.2□□□□□ -2.06
CCDC87Q9NVE4 AL353813.1-201ENST00000440700 253 ntBASIC2.2□□□□□ -2.06
CCDC87Q9NVE4 MIR2115-201ENST00000516657 100 ntBASIC2.2□□□□□ -2.06
CCDC87Q9NVE4 AL096840.1-201ENST00000603287 93 ntBASIC2.2□□□□□ -2.06
CCDC87Q9NVE4 AL442128.1-201ENST00000615151 90 ntBASIC2.2□□□□□ -2.06
CCDC87Q9NVE4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC87Q9NVE4 RNU6-392P-201ENST00000364926 101 ntBASIC2.19□□□□□ -2.06
CCDC87Q9NVE4 MIR206-201ENST00000384872 86 ntBASIC2.19□□□□□ -2.06
CCDC87Q9NVE4 MT-TN-201ENST00000387400 73 ntBASIC2.19□□□□□ -2.06
CCDC87Q9NVE4 RNA5SP338-201ENST00000410495 85 ntBASIC2.19□□□□□ -2.06
CCDC87Q9NVE4 AC005908.1-201ENST00000468701 347 ntBASIC2.19□□□□□ -2.06
CCDC87Q9NVE4 RNU6-947P-201ENST00000516264 106 ntBASIC2.19□□□□□ -2.06
CCDC87Q9NVE4 MIR4264-201ENST00000583520 66 ntBASIC2.19□□□□□ -2.06
CCDC87Q9NVE4 AP000753.3-201ENST00000604083 169 ntBASIC2.19□□□□□ -2.06
CCDC87Q9NVE4 MIR6504-201ENST00000613520 61 ntBASIC2.19□□□□□ -2.06
CCDC87Q9NVE4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC87Q9NVE4 AC244023.1-201ENST00000426884 112 ntBASIC2.18□□□□□ -2.06
CCDC87Q9NVE4 snoU13.2-201ENST00000459201 104 ntBASIC2.18□□□□□ -2.06
CCDC87Q9NVE4 RN7SL274P-201ENST00000492268 272 ntBASIC2.18□□□□□ -2.06
CCDC87Q9NVE4 RNA5SP364-201ENST00000516938 78 ntBASIC2.18□□□□□ -2.06
CCDC87Q9NVE4 SNORA4-201ENST00000584302 138 ntBASIC2.18□□□□□ -2.06
CCDC87Q9NVE4 AC242498.1-201ENST00000604134 111 ntBASIC2.18□□□□□ -2.06
CCDC87Q9NVE4 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC87Q9NVE4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC87Q9NVE4 MIR1302-7-201ENST00000408841 72 ntBASIC2.17□□□□□ -2.06
CCDC87Q9NVE4 SNORD67.1-201ENST00000516618 108 ntBASIC2.17□□□□□ -2.06
CCDC87Q9NVE4 AP003716.2-201ENST00000528260 108 ntBASIC2.17□□□□□ -2.06
CCDC87Q9NVE4 MIR4439-201ENST00000583746 80 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms