Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.12□□□□□ -2.23
MMP28Q9H239 AC244023.1-201ENST00000426884 112 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 RNU6-893P-201ENST00000458841 100 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 MIR1270-201ENST00000459320 83 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 RNU7-6P-201ENST00000516845 62 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 AC007012.1-201ENST00000567192 175 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 AC242498.1-201ENST00000604134 111 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 AL353770.2-201ENST00000620024 78 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 AL035470.1-201ENST00000622571 220 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 SNORD38B-202ENST00000625943 69 ntBASIC1.12□□□□□ -2.23
MMP28Q9H239 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
MMP28Q9H239 SNORD115-2-201ENST00000362842 82 ntBASIC1.11□□□□□ -2.23
MMP28Q9H239 RNU6-654P-201ENST00000364373 107 ntBASIC1.11□□□□□ -2.23
MMP28Q9H239 SNORD115-20-201ENST00000365099 82 ntBASIC1.11□□□□□ -2.23
MMP28Q9H239 MIR1285-1-201ENST00000408593 84 ntBASIC1.11□□□□□ -2.23
MMP28Q9H239 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.11□□□□□ -2.23
MMP28Q9H239 MIR6516-201ENST00000630554 81 ntBASIC1.11□□□□□ -2.23
MMP28Q9H239 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.11□□□□□ -2.23
MMP28Q9H239 Y_RNA.116-201ENST00000363292 103 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 Y_RNA.344-201ENST00000365381 112 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 RNU6-44P-201ENST00000384045 107 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 SNORA18-201ENST00000384416 132 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 RNU6-1237P-201ENST00000384777 107 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 MIR759-201ENST00000390224 91 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 RNU6-205P-201ENST00000390858 107 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 MIR1276-201ENST00000408707 83 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 RNA5SP95-201ENST00000410319 137 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 AL035461.1-201ENST00000421490 332 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 SNORA31.2-201ENST00000516019 134 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 RNU6-589P-201ENST00000516485 107 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 AC019288.1-201ENST00000557918 224 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 MIR3163-201ENST00000581592 73 ntBASIC1.1□□□□□ -2.23
MMP28Q9H239 RNU6-396P-201ENST00000365369 105 ntBASIC1.09□□□□□ -2.23
MMP28Q9H239 Y_RNA.354-201ENST00000365448 111 ntBASIC1.09□□□□□ -2.23
MMP28Q9H239 Y_RNA.362-201ENST00000365518 110 ntBASIC1.09□□□□□ -2.23
MMP28Q9H239 Y_RNA.363-201ENST00000365529 113 ntBASIC1.09□□□□□ -2.23
MMP28Q9H239 RNU6-880P-201ENST00000384526 107 ntBASIC1.09□□□□□ -2.23
MMP28Q9H239 MIR548D2-201ENST00000384955 97 ntBASIC1.09□□□□□ -2.23
MMP28Q9H239 MIR518E-201ENST00000385252 88 ntBASIC1.09□□□□□ -2.23
MMP28Q9H239 RNY4P18-201ENST00000391107 89 ntBASIC1.09□□□□□ -2.23
MMP28Q9H239 RNU4-69P-201ENST00000410677 143 ntBASIC1.09□□□□□ -2.23
MMP28Q9H239 RNU6-919P-201ENST00000516731 104 ntBASIC1.09□□□□□ -2.23
MMP28Q9H239 Y_RNA.709-201ENST00000516952 92 ntBASIC1.09□□□□□ -2.23
MMP28Q9H239 MIR6504-201ENST00000613520 61 ntBASIC1.09□□□□□ -2.23
MMP28Q9H239 AC087741.2-201ENST00000619415 172 ntBASIC1.09□□□□□ -2.23
MMP28Q9H239 SNORA63.5-201ENST00000363548 123 ntBASIC1.08□□□□□ -2.24
MMP28Q9H239 RNY4P6-201ENST00000363667 96 ntBASIC1.08□□□□□ -2.24
MMP28Q9H239 MIR618-201ENST00000385287 98 ntBASIC1.08□□□□□ -2.24
MMP28Q9H239 RNU6-1054P-201ENST00000411293 104 ntBASIC1.08□□□□□ -2.24
MMP28Q9H239 AC063976.4-201ENST00000421971 163 ntBASIC1.08□□□□□ -2.24
MMP28Q9H239 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.08□□□□□ -2.24
MMP28Q9H239 RNU1-123P-201ENST00000458950 160 ntBASIC1.08□□□□□ -2.24
MMP28Q9H239 MIR2115-201ENST00000516657 100 ntBASIC1.08□□□□□ -2.24
MMP28Q9H239 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.08□□□□□ -2.24
MMP28Q9H239 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.08□□□□□ -2.24
MMP28Q9H239 Y_RNA.773-201ENST00000607168 90 ntBASIC1.08□□□□□ -2.24
MMP28Q9H239 MIR6078-201ENST00000611069 100 ntBASIC1.08□□□□□ -2.24
MMP28Q9H239 MIR6740-201ENST00000618268 113 ntBASIC1.08□□□□□ -2.24
MMP28Q9H239 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.07□□□□□ -2.24
MMP28Q9H239 SNORA63.4-201ENST00000362763 126 ntBASIC1.07□□□□□ -2.24
MMP28Q9H239 RNU6-53P-201ENST00000365367 106 ntBASIC1.07□□□□□ -2.24
MMP28Q9H239 RNU6-616P-201ENST00000384353 107 ntBASIC1.07□□□□□ -2.24
MMP28Q9H239 SNORA75.2-201ENST00000391138 150 ntBASIC1.07□□□□□ -2.24
MMP28Q9H239 SNORA75.3-201ENST00000391231 150 ntBASIC1.07□□□□□ -2.24
MMP28Q9H239 RNA5SP102-201ENST00000516865 106 ntBASIC1.07□□□□□ -2.24
MMP28Q9H239 uc_338.6-201ENST00000613544 171 ntBASIC1.07□□□□□ -2.24
MMP28Q9H239 MIR1255B1-201ENST00000636325 63 ntBASIC1.07□□□□□ -2.24
MMP28Q9H239 Y_RNA.191-201ENST00000363972 113 ntBASIC1.06□□□□□ -2.24
MMP28Q9H239 Y_RNA.299-201ENST00000364973 94 ntBASIC1.06□□□□□ -2.24
MMP28Q9H239 MIR588-201ENST00000384900 83 ntBASIC1.06□□□□□ -2.24
MMP28Q9H239 snoU13.2-201ENST00000459201 104 ntBASIC1.06□□□□□ -2.24
MMP28Q9H239 MIR4264-201ENST00000583520 66 ntBASIC1.06□□□□□ -2.24
MMP28Q9H239 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
MMP28Q9H239 Y_RNA.81-201ENST00000362997 102 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 SNORD115-19-201ENST00000363098 82 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 SNORD115-18-201ENST00000363293 82 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 SNORD115-17-201ENST00000364612 82 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 Y_RNA.281-201ENST00000364774 94 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 Y_RNA.330-201ENST00000365230 109 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 SNORA22-201ENST00000383907 134 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 MT-TN-201ENST00000387400 73 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 RNU6-910P-201ENST00000390844 107 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 SNORA40.6-201ENST00000391153 128 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 RNU6-613P-201ENST00000410412 108 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 RNA5SP237-201ENST00000410414 113 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 RNU6-1086P-201ENST00000410930 100 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 RNU7-62P-201ENST00000458856 62 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 RNU11-2P-201ENST00000516898 142 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 RNU7-35P-201ENST00000517174 62 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 MIR4679-2-201ENST00000578358 77 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 AP000753.3-201ENST00000604083 169 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 SEPT14P17-201ENST00000617978 177 ntBASIC1.05□□□□□ -2.24
MMP28Q9H239 Y_RNA.85-201ENST00000363014 111 ntBASIC1.04□□□□□ -2.24
MMP28Q9H239 RNU6-1107P-201ENST00000364817 104 ntBASIC1.04□□□□□ -2.24
MMP28Q9H239 SNORD77B-201ENST00000391112 67 ntBASIC1.04□□□□□ -2.24
MMP28Q9H239 AC004223.1-201ENST00000479840 271 ntBASIC1.04□□□□□ -2.24
MMP28Q9H239 RNU7-79P-201ENST00000516082 62 ntBASIC1.04□□□□□ -2.24
MMP28Q9H239 AC141846.1-201ENST00000568348 142 ntBASIC1.04□□□□□ -2.24
MMP28Q9H239 MIR4452-201ENST00000583004 71 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms