Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 Y_RNA.20-201ENST00000362479 113 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 Y_RNA.288-201ENST00000364854 92 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 RNU6-1292P-201ENST00000383856 107 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 Y_RNA.489-201ENST00000384410 101 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 MIR568-201ENST00000385036 95 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 AL138752.1-201ENST00000452964 351 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 Y_RNA.797-201ENST00000515977 94 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 SNORA31.14-201ENST00000516728 116 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 RNU7-35P-201ENST00000517174 62 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 AC133485.4-201ENST00000561835 220 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 AC138907.4-201ENST00000570107 226 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 Y_RNA.83-201ENST00000363005 113 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 AC096949.1-201ENST00000412047 152 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 SNORD116-25-201ENST00000516517 92 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 MIR3149-201ENST00000584629 83 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 MIR5087-201ENST00000635826 76 ntBASIC0.33□□□□□ -2.36
SCN2AQ99250 RNU6-702P-201ENST00000364982 107 ntBASIC0.32□□□□□ -2.36
SCN2AQ99250 Y_RNA.447-201ENST00000384184 113 ntBASIC0.32□□□□□ -2.36
SCN2AQ99250 SNORA18-201ENST00000384416 132 ntBASIC0.32□□□□□ -2.36
SCN2AQ99250 RNU6-1321P-201ENST00000390905 107 ntBASIC0.32□□□□□ -2.36
SCN2AQ99250 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.32□□□□□ -2.36
SCN2AQ99250 RNU7-53P-201ENST00000516705 60 ntBASIC0.32□□□□□ -2.36
SCN2AQ99250 MRPS18CP4-201ENST00000535821 231 ntBASIC0.32□□□□□ -2.36
SCN2AQ99250 MIR3646-201ENST00000578301 84 ntBASIC0.32□□□□□ -2.36
SCN2AQ99250 MIR378D2-201ENST00000580636 98 ntBASIC0.32□□□□□ -2.36
SCN2AQ99250 SNORA25.18-201ENST00000607153 114 ntBASIC0.32□□□□□ -2.36
SCN2AQ99250 RNU4-16P-201ENST00000364737 141 ntBASIC0.31□□□□□ -2.36
SCN2AQ99250 RNU6-196P-201ENST00000384315 107 ntBASIC0.31□□□□□ -2.36
SCN2AQ99250 MIRLET7F2-201ENST00000385277 83 ntBASIC0.31□□□□□ -2.36
SCN2AQ99250 RNU6-1190P-201ENST00000410811 104 ntBASIC0.31□□□□□ -2.36
SCN2AQ99250 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.31□□□□□ -2.36
SCN2AQ99250 AL162376.1-201ENST00000624117 175 ntBASIC0.31□□□□□ -2.36
SCN2AQ99250 U6.106-201ENST00000636360 105 ntBASIC0.31□□□□□ -2.36
SCN2AQ99250 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
SCN2AQ99250 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.31□□□□□ -2.36
SCN2AQ99250 MIR103A1-201ENST00000362165 78 ntBASIC0.31□□□□□ -2.36
SCN2AQ99250 snoU2_19.4-201ENST00000364329 80 ntBASIC0.31□□□□□ -2.36
SCN2AQ99250 RNA5SP299-201ENST00000391203 116 ntBASIC0.31□□□□□ -2.36
SCN2AQ99250 MIR938-201ENST00000401216 83 ntBASIC0.31□□□□□ -2.36
SCN2AQ99250 Y_RNA.618-201ENST00000410949 107 ntBASIC0.31□□□□□ -2.36
SCN2AQ99250 AL022718.1-201ENST00000412004 84 ntBASIC0.31□□□□□ -2.36
SCN2AQ99250 AL118496.2-201ENST00000448300 230 ntBASIC0.31□□□□□ -2.36
SCN2AQ99250 RNU4-58P-201ENST00000363192 141 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 Y_RNA.617-201ENST00000410920 90 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.3□□□□□ -2.36
SCN2AQ99250 AP002392.1-201ENST00000537692 208 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 AL353621.2-201ENST00000605340 133 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 Y_RNA.52-201ENST00000362760 96 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 Y_RNA.60-201ENST00000362831 98 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 Y_RNA.174-201ENST00000363781 105 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 Y_RNA.200-201ENST00000364018 102 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 RNY1P13-201ENST00000365030 105 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 RNU6-690P-201ENST00000365242 106 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 Y_RNA.435-201ENST00000384095 112 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 Y_RNA.440-201ENST00000384120 114 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 RNU6-574P-201ENST00000384265 107 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 RNU6-918P-201ENST00000391219 106 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 AC015818.7-201ENST00000428754 109 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 AC087499.7-201ENST00000441958 109 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 SNORA25.12-201ENST00000516202 82 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 MIR4667-201ENST00000578933 66 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 MIR4308-201ENST00000580634 81 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 DNAJC19P2-201ENST00000593340 302 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 MIR6718-201ENST00000616153 80 ntBASIC0.3□□□□□ -2.36
SCN2AQ99250 MIR30D-201ENST00000362283 70 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 Y_RNA.280-201ENST00000364765 112 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 Y_RNA.307-201ENST00000365022 117 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 Y_RNA.567-201ENST00000384736 106 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 RNU6-447P-201ENST00000410293 104 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 RNU6-1118P-201ENST00000410382 104 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 RNU6-1076P-201ENST00000410397 104 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 RNU6-355P-201ENST00000410427 104 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 RNU6-791P-201ENST00000410467 104 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 RNU6-705P-201ENST00000410601 104 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 RNU6-1100P-201ENST00000410691 104 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 RNU6-860P-201ENST00000410860 104 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 RNU6-1217P-201ENST00000411276 104 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 RNU6-785P-201ENST00000411324 104 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 AC073261.1-201ENST00000429409 121 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 AC022523.2-201ENST00000561045 150 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 U6.90-201ENST00000614007 104 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 U6.70-201ENST00000620287 104 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 AL365265.1-201ENST00000621045 234 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 MIR6844-201ENST00000637122 62 ntBASIC0.29□□□□□ -2.36
SCN2AQ99250 Y_RNA.518-201ENST00000384552 113 ntBASIC0.28□□□□□ -2.36
SCN2AQ99250 SNORD71-201ENST00000411292 86 ntBASIC0.28□□□□□ -2.36
SCN2AQ99250 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.28□□□□□ -2.36
SCN2AQ99250 MTATP8P1-201ENST00000467115 207 ntBASIC0.28□□□□□ -2.36
SCN2AQ99250 AC112693.2-201ENST00000556538 232 ntBASIC0.28□□□□□ -2.36
SCN2AQ99250 AC072026.1-201ENST00000605023 201 ntBASIC0.28□□□□□ -2.36
SCN2AQ99250 Y_RNA.470-201ENST00000384307 117 ntBASIC0.28□□□□□ -2.37
SCN2AQ99250 Y_RNA.536-201ENST00000384621 113 ntBASIC0.28□□□□□ -2.37
SCN2AQ99250 RNU6-469P-201ENST00000516253 101 ntBASIC0.28□□□□□ -2.37
SCN2AQ99250 Y_RNA.697-201ENST00000516776 113 ntBASIC0.28□□□□□ -2.37
SCN2AQ99250 RNU6-1271P-201ENST00000517049 105 ntBASIC0.28□□□□□ -2.37
SCN2AQ99250 AC021613.1-201ENST00000623880 111 ntBASIC0.28□□□□□ -2.37
SCN2AQ99250 SNORA20.1-201ENST00000364790 130 ntBASIC0.27□□□□□ -2.37
SCN2AQ99250 RNU6-1327P-201ENST00000365302 105 ntBASIC0.27□□□□□ -2.37
SCN2AQ99250 SNORA50A-201ENST00000384225 134 ntBASIC0.27□□□□□ -2.37
SCN2AQ99250 Y_RNA.476-201ENST00000384347 108 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms