Protein–RNA interactions for Protein: Q96NZ1

FOXN4, Forkhead box protein N4, humanhuman

Predictions only

Length 517 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4Q96NZ1 MIR6734-201ENST00000621166 68 ntBASIC0.96□□□□□ -2.26
FOXN4Q96NZ1 Z97988.1-201ENST00000637697 135 ntBASIC0.96□□□□□ -2.26
FOXN4Q96NZ1 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 AL391516.1-201ENST00000554380 2449 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 MIR103A2-201ENST00000362154 78 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 RNU1-93P-201ENST00000364704 169 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 Y_RNA.346-201ENST00000365385 112 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 MIR489-201ENST00000384923 84 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 SNORD12C-201ENST00000386307 89 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 MIR1185-1-201ENST00000408598 86 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 RNA5SP261-201ENST00000410536 106 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 RNA5SP136-201ENST00000410906 107 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 AC245047.7-201ENST00000440265 293 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 RNU7-113P-201ENST00000459273 62 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 AC048334.1-201ENST00000477975 159 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 RNA5SP33-201ENST00000516687 98 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 SNORD114-21-201ENST00000606412 72 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 MIR6841-201ENST00000637129 72 ntBASIC0.95□□□□□ -2.26
FOXN4Q96NZ1 RNA5SP264-201ENST00000363115 107 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 Y_RNA.353-201ENST00000365440 108 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 SNORA25-201ENST00000384384 134 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 Y_RNA.531-201ENST00000384589 121 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 SNORD38B-201ENST00000384690 67 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 Y_RNA.563-201ENST00000384707 108 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 RNU6-1237P-201ENST00000384777 107 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 MIR520E-201ENST00000384867 87 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 MIR222-201ENST00000384992 110 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 MIR548A3-201ENST00000385297 97 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 RNA5SP95-201ENST00000410319 137 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 AC244023.1-201ENST00000426884 112 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 Y_RNA.649-201ENST00000459077 103 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 AC113410.1-201ENST00000505029 247 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 AC242498.1-201ENST00000604134 111 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 MIR6129-201ENST00000616087 109 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 SNORD38B-202ENST00000625943 69 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 U6.95-201ENST00000636931 70 ntBASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
FOXN4Q96NZ1 Y_RNA.198-201ENST00000364013 98 ntBASIC0.93□□□□□ -2.26
FOXN4Q96NZ1 RNU6-654P-201ENST00000364373 107 ntBASIC0.93□□□□□ -2.26
FOXN4Q96NZ1 SNORA32-201ENST00000384072 121 ntBASIC0.93□□□□□ -2.26
FOXN4Q96NZ1 Y_RNA.430-201ENST00000384081 110 ntBASIC0.93□□□□□ -2.26
FOXN4Q96NZ1 RNU6-342P-201ENST00000384521 104 ntBASIC0.93□□□□□ -2.26
FOXN4Q96NZ1 RNU6-205P-201ENST00000390858 107 ntBASIC0.93□□□□□ -2.26
FOXN4Q96NZ1 RNU6-1064P-201ENST00000410626 104 ntBASIC0.93□□□□□ -2.26
FOXN4Q96NZ1 COX6CP6-201ENST00000490840 228 ntBASIC0.93□□□□□ -2.26
FOXN4Q96NZ1 SNORA31.2-201ENST00000516019 134 ntBASIC0.93□□□□□ -2.26
FOXN4Q96NZ1 AL670379.3-201ENST00000605040 251 ntBASIC0.93□□□□□ -2.26
FOXN4Q96NZ1 MIR6516-201ENST00000630554 81 ntBASIC0.93□□□□□ -2.26
FOXN4Q96NZ1 Y_RNA.213-201ENST00000364178 111 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 Y_RNA.330-201ENST00000365230 109 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 RNU6-396P-201ENST00000365369 105 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 Y_RNA.363-201ENST00000365529 113 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 RNU6-1056P-201ENST00000383996 107 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 RNU6-429P-201ENST00000384582 108 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 RNU6-476P-201ENST00000384726 107 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 MIR759-201ENST00000390224 91 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 RNU6-893P-201ENST00000458841 100 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 RPS29P1-201ENST00000465274 159 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 RPS23P4-201ENST00000487908 423 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 RNU7-6P-201ENST00000516845 62 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 AP003716.2-201ENST00000528260 108 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 MIR548AE2-201ENST00000583456 67 ntBASIC0.92□□□□□ -2.26
FOXN4Q96NZ1 Y_RNA.354-201ENST00000365448 111 ntBASIC0.91□□□□□ -2.26
FOXN4Q96NZ1 RNU6-1144P-201ENST00000384247 104 ntBASIC0.91□□□□□ -2.26
FOXN4Q96NZ1 SNORA18-201ENST00000384416 132 ntBASIC0.91□□□□□ -2.26
FOXN4Q96NZ1 SNORD20-201ENST00000384550 80 ntBASIC0.91□□□□□ -2.26
FOXN4Q96NZ1 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
FOXN4Q96NZ1 RNU6-1054P-201ENST00000411293 104 ntBASIC0.91□□□□□ -2.26
FOXN4Q96NZ1 Y_RNA.629-201ENST00000411368 105 ntBASIC0.91□□□□□ -2.26
FOXN4Q96NZ1 RPS29P28-201ENST00000446439 141 ntBASIC0.91□□□□□ -2.26
FOXN4Q96NZ1 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.91□□□□□ -2.26
FOXN4Q96NZ1 RMST_2.1-201ENST00000617263 136 ntBASIC0.91□□□□□ -2.26
FOXN4Q96NZ1 AC027335.2-201ENST00000624030 375 ntBASIC0.91□□□□□ -2.26
FOXN4Q96NZ1 Y_RNA.35-201ENST00000362601 101 ntBASIC0.9□□□□□ -2.27
FOXN4Q96NZ1 RNU1-124P-201ENST00000363861 145 ntBASIC0.9□□□□□ -2.27
FOXN4Q96NZ1 Y_RNA.273-201ENST00000364703 102 ntBASIC0.9□□□□□ -2.27
FOXN4Q96NZ1 RNU6-1325P-201ENST00000364905 105 ntBASIC0.9□□□□□ -2.27
FOXN4Q96NZ1 SNORD116-21-201ENST00000384507 92 ntBASIC0.9□□□□□ -2.27
FOXN4Q96NZ1 RNU6-910P-201ENST00000390844 107 ntBASIC0.9□□□□□ -2.27
FOXN4Q96NZ1 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.9□□□□□ -2.27
FOXN4Q96NZ1 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.9□□□□□ -2.27
FOXN4Q96NZ1 MIR1270-201ENST00000459320 83 ntBASIC0.9□□□□□ -2.27
FOXN4Q96NZ1 MIR6767-201ENST00000637302 66 ntBASIC0.9□□□□□ -2.27
FOXN4Q96NZ1 SNORD115-2-201ENST00000362842 82 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 SNORD115-20-201ENST00000365099 82 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 Y_RNA.549-201ENST00000384657 102 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 MIR588-201ENST00000384900 83 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 SNORA75.2-201ENST00000391138 150 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 SNORA75.3-201ENST00000391231 150 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 RNU4-69P-201ENST00000410677 143 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 MIR2115-201ENST00000516657 100 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 AC007012.1-201ENST00000567192 175 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 MIR3163-201ENST00000581592 73 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 MIR4661-201ENST00000582720 75 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 AP000753.3-201ENST00000604083 169 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 uc_338.6-201ENST00000613544 171 ntBASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 MIR6740-201ENST00000618268 113 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 221.9 ms