Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Gm7729-201ENSMUST00000050143 801 ntBASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Gm44430-201ENSMUST00000203376 995 ntBASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 AC125350.1-201ENSMUST00000225115 903 ntBASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 AC130713.1-201ENSMUST00000228853 1096 ntBASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Ptprs-211ENSMUST00000223859 5588 ntBASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Prpf40aQ9R1C7 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 CT010478.1-201ENSMUST00000220747 2787 ntBASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Gm36967-201ENSMUST00000193814 266 ntBASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Prpf40aQ9R1C7 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Prpf40aQ9R1C7 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Prpf40aQ9R1C7 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Prpf40aQ9R1C7 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Prpf40aQ9R1C7 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Prpf40aQ9R1C7 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms