Protein–RNA interactions for Protein: Q9JKE1

Trem3, TREM-3, mousemouse

Predictions only

Length 183 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem3Q9JKE1 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trem3Q9JKE1 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trem3Q9JKE1 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Trem3Q9JKE1 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trem3Q9JKE1 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trem3Q9JKE1 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Trem3Q9JKE1 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trem3Q9JKE1 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Gm44729-201ENSMUST00000206759 2052 ntBASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Gm12669-201ENSMUST00000122162 1009 ntBASIC12.97□□□□□ -0.33
Trem3Q9JKE1 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Gm8520-201ENSMUST00000186517 868 ntBASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trem3Q9JKE1 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Mir5122-201ENSMUST00000175004 89 ntBASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Rbfox2-206ENSMUST00000227314 1810 ntBASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trem3Q9JKE1 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trem3Q9JKE1 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem3Q9JKE1 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem3Q9JKE1 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem3Q9JKE1 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem3Q9JKE1 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trem3Q9JKE1 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Trem3Q9JKE1 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trem3Q9JKE1 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trem3Q9JKE1 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC12.95□□□□□ -0.34
Trem3Q9JKE1 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trem3Q9JKE1 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trem3Q9JKE1 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms