Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Smco4Q9JIS3 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Smco4Q9JIS3 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Smco4Q9JIS3 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Smco4Q9JIS3 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 BC037039-201ENSMUST00000192003 2205 ntBASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Gm15546-201ENSMUST00000122095 826 ntBASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC12.93□□□□□ -0.34
Smco4Q9JIS3 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Smco4Q9JIS3 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Smco4Q9JIS3 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Smco4Q9JIS3 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Smco4Q9JIS3 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Smco4Q9JIS3 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Smco4Q9JIS3 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Smco4Q9JIS3 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Smco4Q9JIS3 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Smco4Q9JIS3 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC12.9□□□□□ -0.34
Smco4Q9JIS3 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Smco4Q9JIS3 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Smco4Q9JIS3 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms