Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Gm6089-201ENSMUST00000197666 938 ntBASIC16.95■□□□□ 0.3
Sf3b1Q99NB9 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Sf3b1Q99NB9 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
Sf3b1Q99NB9 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sf3b1Q99NB9 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 AC154527.4-201ENSMUST00000224364 1667 ntBASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Gm11780-201ENSMUST00000136880 516 ntBASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Gm6550-201ENSMUST00000187574 993 ntBASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sf3b1Q99NB9 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Dancr-204ENSMUST00000132389 2347 ntBASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Gm5364-201ENSMUST00000216789 889 ntBASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 AV026068-213ENSMUST00000223675 1171 ntBASIC16.93■□□□□ 0.3
Sf3b1Q99NB9 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Gm37500-201ENSMUST00000192059 1443 ntBASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Gm5867-201ENSMUST00000063197 592 ntBASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Sf3b1Q99NB9 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Sf3b1Q99NB9 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sf3b1Q99NB9 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Sf3b1Q99NB9 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms