Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Msh4Q99MT2 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Msh4Q99MT2 CT010478.1-201ENSMUST00000220747 2787 ntBASIC15.62■□□□□ 0.09
Msh4Q99MT2 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Msh4Q99MT2 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Msh4Q99MT2 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Msh4Q99MT2 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Msh4Q99MT2 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Msh4Q99MT2 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Gm27742-201ENSMUST00000184667 60 ntBASIC15.61■□□□□ 0.09
Msh4Q99MT2 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Zkscan4-202ENSMUST00000225845 1506 ntBASIC15.61■□□□□ 0.09
Msh4Q99MT2 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Msh4Q99MT2 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Gm9103-201ENSMUST00000119371 405 ntBASIC15.6■□□□□ 0.09
Msh4Q99MT2 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Msh4Q99MT2 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Gm17807-201ENSMUST00000186869 298 ntBASIC15.59■□□□□ 0.09
Msh4Q99MT2 Ighv6-1-201ENSMUST00000193612 343 ntBASIC15.59■□□□□ 0.09
Msh4Q99MT2 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Msh4Q99MT2 AC115863.1-201ENSMUST00000214815 1813 ntBASIC15.59■□□□□ 0.09
Msh4Q99MT2 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Msh4Q99MT2 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Msh4Q99MT2 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC15.58■□□□□ 0.09
Msh4Q99MT2 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Msh4Q99MT2 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Msh4Q99MT2 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
Msh4Q99MT2 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Msh4Q99MT2 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Msh4Q99MT2 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Msh4Q99MT2 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Msh4Q99MT2 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC15.58■□□□□ 0.08
Msh4Q99MT2 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Msh4Q99MT2 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Msh4Q99MT2 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Msh4Q99MT2 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC15.58■□□□□ 0.08
Msh4Q99MT2 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC15.58■□□□□ 0.08
Msh4Q99MT2 Otx2os1-206ENSMUST00000228153 787 ntBASIC15.58■□□□□ 0.08
Msh4Q99MT2 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Msh4Q99MT2 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Msh4Q99MT2 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 82.2 ms