Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Ntrk2-205ENSMUST00000224402 2284 ntBASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Gm10052-201ENSMUST00000168019 960 ntBASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Gm7729-201ENSMUST00000050143 801 ntBASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps39Q8R5L3 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps39Q8R5L3 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Rbfox2-206ENSMUST00000227314 1810 ntBASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Gm18032-201ENSMUST00000222541 538 ntBASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
Vps39Q8R5L3 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms