Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Gm18733-201ENSMUST00000173950 856 ntBASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Gm44430-201ENSMUST00000203376 995 ntBASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ushbp1Q8R370 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Gm10052-201ENSMUST00000168019 960 ntBASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Gm7729-201ENSMUST00000050143 801 ntBASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ushbp1Q8R370 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
Ushbp1Q8R370 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Ushbp1Q8R370 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Ushbp1Q8R370 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Ushbp1Q8R370 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Ushbp1Q8R370 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Ushbp1Q8R370 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 AC153889.1-201ENSMUST00000219257 330 ntBASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Ntrk2-205ENSMUST00000224402 2284 ntBASIC17.89■□□□□ 0.45
Ushbp1Q8R370 AC132265.1-201ENSMUST00000219233 1665 ntBASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ushbp1Q8R370 Rbfox2-206ENSMUST00000227314 1810 ntBASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
Ushbp1Q8R370 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms