Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Spsb2-203ENSMUST00000112473 1322 ntBASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Gm15442-201ENSMUST00000117905 1527 ntBASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Gm12669-201ENSMUST00000122162 1009 ntBASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Gm16061-201ENSMUST00000122167 857 ntBASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ccdc28aQ8CEI3 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
Ccdc28aQ8CEI3 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Ccdc28aQ8CEI3 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Ccdc28aQ8CEI3 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Ccdc28aQ8CEI3 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Gm27528-202ENSMUST00000222916 2012 ntBASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Ccdc28aQ8CEI3 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC16.88■□□□□ 0.29
Ccdc28aQ8CEI3 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc28aQ8CEI3 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc28aQ8CEI3 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc28aQ8CEI3 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc28aQ8CEI3 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc28aQ8CEI3 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc28aQ8CEI3 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.88■□□□□ 0.29
Ccdc28aQ8CEI3 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc28aQ8CEI3 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Ccdc28aQ8CEI3 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc28aQ8CEI3 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc28aQ8CEI3 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc28aQ8CEI3 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms