Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.71■□□□□ 0.42
Trim47Q8C0E3 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trim47Q8C0E3 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim47Q8C0E3 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Gm7862-201ENSMUST00000121461 292 ntBASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim47Q8C0E3 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Gm12497-201ENSMUST00000138778 237 ntBASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Gm8655-201ENSMUST00000221159 852 ntBASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim47Q8C0E3 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
Trim47Q8C0E3 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms