Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trub1Q8C0D0 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trub1Q8C0D0 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trub1Q8C0D0 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
Trub1Q8C0D0 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.52■□□□□ 0.24
Trub1Q8C0D0 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trub1Q8C0D0 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trub1Q8C0D0 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
Trub1Q8C0D0 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trub1Q8C0D0 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trub1Q8C0D0 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trub1Q8C0D0 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Trub1Q8C0D0 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Gm13312-201ENSMUST00000119631 718 ntBASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Gm27742-201ENSMUST00000184667 60 ntBASIC16.51■□□□□ 0.23
Trub1Q8C0D0 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trub1Q8C0D0 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 AC153794.1-201ENSMUST00000169148 126 ntBASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Gm7507-201ENSMUST00000183053 1008 ntBASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 AC133083.1-201ENSMUST00000221736 2209 ntBASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trub1Q8C0D0 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC16.49■□□□□ 0.23
Trub1Q8C0D0 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trub1Q8C0D0 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Trub1Q8C0D0 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Trub1Q8C0D0 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms