Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx55Q6ZPL9 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx55Q6ZPL9 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC18.16■□□□□ 0.5
Ddx55Q6ZPL9 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx55Q6ZPL9 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC18.16■□□□□ 0.5
Ddx55Q6ZPL9 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC18.16■□□□□ 0.5
Ddx55Q6ZPL9 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx55Q6ZPL9 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx55Q6ZPL9 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx55Q6ZPL9 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx55Q6ZPL9 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Ddx55Q6ZPL9 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx55Q6ZPL9 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx55Q6ZPL9 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 Gm36858-201ENSMUST00000194501 2391 ntBASIC18.15■□□□□ 0.5
Ddx55Q6ZPL9 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ddx55Q6ZPL9 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ddx55Q6ZPL9 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Gm13365-201ENSMUST00000121188 973 ntBASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 AA543401-201ENSMUST00000164248 1269 ntBASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Gm5312-201ENSMUST00000203728 547 ntBASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 AC122024.2-201ENSMUST00000220086 871 ntBASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Gm16401-202ENSMUST00000197463 2074 ntBASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Gm13332-201ENSMUST00000120451 1398 ntBASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Ddx55Q6ZPL9 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Gm6257-201ENSMUST00000163864 910 ntBASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Gm44335-201ENSMUST00000196879 141 ntBASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Gm44297-201ENSMUST00000198304 141 ntBASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Gm44346-201ENSMUST00000198851 141 ntBASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Ddx55Q6ZPL9 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Gm27301-201ENSMUST00000184012 127 ntBASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ddx55Q6ZPL9 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms