Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Mir8098-201ENSMUST00000184011 137 ntBASIC19.2■□□□□ 0.66
Vps54Q5SPW0 AC133598.3-202ENSMUST00000224219 531 ntBASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Rbfox2-206ENSMUST00000227314 1810 ntBASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Vps54Q5SPW0 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Gm9172-201ENSMUST00000212092 954 ntBASIC19.19■□□□□ 0.66
Vps54Q5SPW0 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Vps54Q5SPW0 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Gm28659-201ENSMUST00000188013 759 ntBASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Vps54Q5SPW0 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Gm12497-201ENSMUST00000138778 237 ntBASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 AC164629.2-201ENSMUST00000217916 270 ntBASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC19.17■□□□□ 0.66
Vps54Q5SPW0 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 Gm8097-201ENSMUST00000117903 829 ntBASIC19.16■□□□□ 0.66
Vps54Q5SPW0 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps54Q5SPW0 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms