Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddb1Q3U1J4 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC20.27■□□□□ 0.84
Ddb1Q3U1J4 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddb1Q3U1J4 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddb1Q3U1J4 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Ddb1Q3U1J4 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Ddb1Q3U1J4 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
Ddb1Q3U1J4 AC119177.1-201ENSMUST00000227647 1332 ntBASIC20.27■□□□□ 0.83
Ddb1Q3U1J4 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Gm12428-201ENSMUST00000119844 727 ntBASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Gm27622-201ENSMUST00000183779 60 ntBASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 AC140375.2-201ENSMUST00000225283 584 ntBASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddb1Q3U1J4 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Gm23547-201ENSMUST00000158210 271 ntBASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Mir6977-201ENSMUST00000184960 64 ntBASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ddb1Q3U1J4 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Gm7774-201ENSMUST00000200064 533 ntBASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 AC126408.1-201ENSMUST00000225184 523 ntBASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddb1Q3U1J4 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Rpph1-201ENSMUST00000175096 319 ntBASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ddb1Q3U1J4 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Gm27430-201ENSMUST00000184585 107 ntBASIC20.22■□□□□ 0.83
Ddb1Q3U1J4 Gm44333-201ENSMUST00000197168 107 ntBASIC20.22■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms