Protein–RNA interactions for Protein: P97503

Nkx3-2, Homeobox protein Nkx-3.2, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-2P97503 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-2P97503 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-2P97503 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Nkx3-2P97503 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-2P97503 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-2P97503 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-2P97503 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
Nkx3-2P97503 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-2P97503 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-2P97503 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-2P97503 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-2P97503 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-2P97503 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nkx3-2P97503 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Nkx3-2P97503 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Gm12644-201ENSMUST00000119935 606 ntBASIC15.1■□□□□ 0.01
Nkx3-2P97503 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC15.1■□□□□ 0.01
Nkx3-2P97503 Gm36967-201ENSMUST00000193814 266 ntBASIC15.1■□□□□ 0.01
Nkx3-2P97503 Gm13830-205ENSMUST00000201195 1155 ntBASIC15.1■□□□□ 0.01
Nkx3-2P97503 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC15.1■□□□□ 0.01
Nkx3-2P97503 CT009713.7-201ENSMUST00000224689 571 ntBASIC15.1■□□□□ 0.01
Nkx3-2P97503 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nkx3-2P97503 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Mzt1-203ENSMUST00000227948 952 ntBASIC15.09■□□□□ 0.01
Nkx3-2P97503 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nkx3-2P97503 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Nkx3-2P97503 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Nkx3-2P97503 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Nkx3-2P97503 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC15.08■□□□□ 0.01
Nkx3-2P97503 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
Nkx3-2P97503 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nkx3-2P97503 Gm7935-201ENSMUST00000100555 1278 ntBASIC15.08■□□□□ 0
Nkx3-2P97503 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC15.08■□□□□ 0
Nkx3-2P97503 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nkx3-2P97503 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC15.08■□□□□ 0
Nkx3-2P97503 Gm13884-201ENSMUST00000118103 829 ntBASIC15.08■□□□□ 0
Nkx3-2P97503 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Nkx3-2P97503 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
Nkx3-2P97503 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nkx3-2P97503 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC15.08■□□□□ 0
Nkx3-2P97503 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC15.08■□□□□ 0
Nkx3-2P97503 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC15.08■□□□□ 0
Nkx3-2P97503 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nkx3-2P97503 Rps4l-201ENSMUST00000071745 943 ntBASIC15.08■□□□□ 0
Nkx3-2P97503 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nkx3-2P97503 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Nkx3-2P97503 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nkx3-2P97503 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nkx3-2P97503 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nkx3-2P97503 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC15.08■□□□□ 0
Nkx3-2P97503 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nkx3-2P97503 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Nkx3-2P97503 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC15.07■□□□□ 0
Nkx3-2P97503 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nkx3-2P97503 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms