Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm7222-201ENSMUST00000117512 906 ntBASIC13.81□□□□□ -0.2
Nkx3-1P97436 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Nkx3-1P97436 Gm27628-201ENSMUST00000184911 107 ntBASIC13.81□□□□□ -0.2
Nkx3-1P97436 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC13.81□□□□□ -0.2
Nkx3-1P97436 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Nkx3-1P97436 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Nkx3-1P97436 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Nkx3-1P97436 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Nkx3-1P97436 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Nkx3-1P97436 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Nkx3-1P97436 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Nkx3-1P97436 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Nkx3-1P97436 AC132265.1-201ENSMUST00000219233 1665 ntBASIC13.81□□□□□ -0.2
Nkx3-1P97436 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Nkx3-1P97436 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Nkx3-1P97436 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Nkx3-1P97436 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Gm6858-201ENSMUST00000208582 1468 ntBASIC13.8□□□□□ -0.2
Nkx3-1P97436 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Gm14140-201ENSMUST00000119999 995 ntBASIC13.8□□□□□ -0.2
Nkx3-1P97436 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Gm3928-201ENSMUST00000121141 1307 ntBASIC13.8□□□□□ -0.2
Nkx3-1P97436 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Nkx3-1P97436 Gm7292-201ENSMUST00000194706 2527 ntBASIC13.8□□□□□ -0.2
Nkx3-1P97436 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC13.8□□□□□ -0.2
Nkx3-1P97436 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
Nkx3-1P97436 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Nkx3-1P97436 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Nkx3-1P97436 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC13.78□□□□□ -0.2
Nkx3-1P97436 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Mir6404-201ENSMUST00000183699 94 ntBASIC13.78□□□□□ -0.2
Nkx3-1P97436 Gm27702-201ENSMUST00000184512 56 ntBASIC13.78□□□□□ -0.2
Nkx3-1P97436 CT943659.1-201ENSMUST00000215459 326 ntBASIC13.78□□□□□ -0.2
Nkx3-1P97436 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Nkx3-1P97436 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Nkx3-1P97436 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Nkx3-1P97436 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms