Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Shmt1P50431 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Shmt1P50431 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Shmt1P50431 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Shmt1P50431 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Shmt1P50431 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.9■□□□□ 0.3
Shmt1P50431 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Shmt1P50431 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
Shmt1P50431 Gm4459-201ENSMUST00000118750 468 ntBASIC16.9■□□□□ 0.3
Shmt1P50431 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC16.9■□□□□ 0.3
Shmt1P50431 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Shmt1P50431 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
Shmt1P50431 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Shmt1P50431 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC16.89■□□□□ 0.29
Shmt1P50431 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC16.89■□□□□ 0.29
Shmt1P50431 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
Shmt1P50431 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Shmt1P50431 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Shmt1P50431 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
Shmt1P50431 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC16.88■□□□□ 0.29
Shmt1P50431 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Shmt1P50431 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC16.88■□□□□ 0.29
Shmt1P50431 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC16.88■□□□□ 0.29
Shmt1P50431 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
Shmt1P50431 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC16.88■□□□□ 0.29
Shmt1P50431 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Shmt1P50431 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Shmt1P50431 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Shmt1P50431 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Shmt1P50431 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Shmt1P50431 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Shmt1P50431 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Shmt1P50431 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Shmt1P50431 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Shmt1P50431 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC16.87■□□□□ 0.29
Shmt1P50431 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.87■□□□□ 0.29
Shmt1P50431 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Shmt1P50431 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Shmt1P50431 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC16.87■□□□□ 0.29
Shmt1P50431 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Gm9172-201ENSMUST00000212092 954 ntBASIC16.87■□□□□ 0.29
Shmt1P50431 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC16.87■□□□□ 0.29
Shmt1P50431 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC16.87■□□□□ 0.29
Shmt1P50431 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Shmt1P50431 Rbfox2-206ENSMUST00000227314 1810 ntBASIC16.86■□□□□ 0.29
Shmt1P50431 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
Shmt1P50431 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Shmt1P50431 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC16.86■□□□□ 0.29
Shmt1P50431 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Shmt1P50431 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Shmt1P50431 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Shmt1P50431 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Shmt1P50431 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms