Protein–RNA interactions for Protein: P31041

Cd28, T-cell-specific surface glycoprotein CD28, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd28P31041 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cd28P31041 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cd28P31041 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Cd28P31041 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cd28P31041 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cd28P31041 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Cd28P31041 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cd28P31041 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Cd28P31041 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Cd28P31041 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Cd28P31041 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Cd28P31041 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC14.16□□□□□ -0.14
Cd28P31041 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cd28P31041 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
Cd28P31041 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Gm14464-201ENSMUST00000119658 1254 ntBASIC14.15□□□□□ -0.14
Cd28P31041 AC159205.3-201ENSMUST00000224614 874 ntBASIC14.15□□□□□ -0.14
Cd28P31041 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Cd28P31041 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cd28P31041 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC14.15□□□□□ -0.14
Cd28P31041 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC14.14□□□□□ -0.15
Cd28P31041 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
Cd28P31041 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Cd28P31041 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Cd28P31041 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Cd28P31041 Trmt13-210ENSMUST00000198454 880 ntBASIC14.14□□□□□ -0.15
Cd28P31041 Gm7791-201ENSMUST00000219066 539 ntBASIC14.14□□□□□ -0.15
Cd28P31041 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC14.14□□□□□ -0.15
Cd28P31041 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC14.14□□□□□ -0.15
Cd28P31041 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Cd28P31041 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Cd28P31041 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC14.14□□□□□ -0.15
Cd28P31041 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cd28P31041 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cd28P31041 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cd28P31041 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC14.13□□□□□ -0.15
Cd28P31041 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cd28P31041 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cd28P31041 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cd28P31041 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cd28P31041 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cd28P31041 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cd28P31041 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms