Protein–RNA interactions for Protein: P15975

Usp53, Inactive ubiquitin carboxyl-terminal hydrolase 53, mousemouse

Predictions only

Length 1,069 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp53P15975 Gm4518-201ENSMUST00000182638 718 ntBASIC18.49■□□□□ 0.55
Usp53P15975 Gm8330-201ENSMUST00000182754 1008 ntBASIC18.49■□□□□ 0.55
Usp53P15975 Gm4575-201ENSMUST00000182991 1002 ntBASIC18.49■□□□□ 0.55
Usp53P15975 Gm8709-201ENSMUST00000183230 1012 ntBASIC18.49■□□□□ 0.55
Usp53P15975 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC18.49■□□□□ 0.55
Usp53P15975 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Usp53P15975 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Usp53P15975 Gm10293-201ENSMUST00000076317 1002 ntBASIC18.49■□□□□ 0.55
Usp53P15975 Gm6316-201ENSMUST00000082064 1020 ntBASIC18.49■□□□□ 0.55
Usp53P15975 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Usp53P15975 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Usp53P15975 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Usp53P15975 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Usp53P15975 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Usp53P15975 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC18.48■□□□□ 0.55
Usp53P15975 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp53P15975 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC18.48■□□□□ 0.55
Usp53P15975 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp53P15975 Gm20628-201ENSMUST00000177363 3215 ntBASIC18.48■□□□□ 0.55
Usp53P15975 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Usp53P15975 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp53P15975 Gm15173-201ENSMUST00000122049 433 ntBASIC18.48■□□□□ 0.55
Usp53P15975 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC18.48■□□□□ 0.55
Usp53P15975 Gm18622-201ENSMUST00000219361 595 ntBASIC18.48■□□□□ 0.55
Usp53P15975 AC138767.1-201ENSMUST00000222661 415 ntBASIC18.48■□□□□ 0.55
Usp53P15975 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Usp53P15975 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Usp53P15975 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp53P15975 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp53P15975 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp53P15975 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp53P15975 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp53P15975 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Usp53P15975 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC18.48■□□□□ 0.55
Usp53P15975 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Usp53P15975 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp53P15975 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp53P15975 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Usp53P15975 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Usp53P15975 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Usp53P15975 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Usp53P15975 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp53P15975 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp53P15975 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp53P15975 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp53P15975 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp53P15975 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp53P15975 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Usp53P15975 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC18.47■□□□□ 0.55
Usp53P15975 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Usp53P15975 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC18.47■□□□□ 0.55
Usp53P15975 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC18.47■□□□□ 0.55
Usp53P15975 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Usp53P15975 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC18.47■□□□□ 0.55
Usp53P15975 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Usp53P15975 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Usp53P15975 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp53P15975 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.47■□□□□ 0.55
Usp53P15975 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Usp53P15975 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Usp53P15975 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC18.47■□□□□ 0.55
Usp53P15975 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC18.46■□□□□ 0.55
Usp53P15975 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC18.46■□□□□ 0.55
Usp53P15975 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
Usp53P15975 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Gm5837-201ENSMUST00000191844 1369 ntBASIC18.46■□□□□ 0.55
Usp53P15975 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
Usp53P15975 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Usp53P15975 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC18.46■□□□□ 0.55
Usp53P15975 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Gm8784-201ENSMUST00000222096 1435 ntBASIC18.46■□□□□ 0.55
Usp53P15975 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Usp53P15975 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
Usp53P15975 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Usp53P15975 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
Usp53P15975 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp53P15975 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Usp53P15975 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Usp53P15975 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms