Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC19.01■□□□□ 0.63
Col3a1P08121 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC19.01■□□□□ 0.63
Col3a1P08121 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
Col3a1P08121 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19■□□□□ 0.63
Col3a1P08121 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
Col3a1P08121 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC19■□□□□ 0.63
Col3a1P08121 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC19■□□□□ 0.63
Col3a1P08121 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC19■□□□□ 0.63
Col3a1P08121 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Col3a1P08121 AC122024.2-201ENSMUST00000220086 871 ntBASIC19■□□□□ 0.63
Col3a1P08121 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC19■□□□□ 0.63
Col3a1P08121 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC19■□□□□ 0.63
Col3a1P08121 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Col3a1P08121 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC19■□□□□ 0.63
Col3a1P08121 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC19■□□□□ 0.63
Col3a1P08121 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col3a1P08121 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Col3a1P08121 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Col3a1P08121 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
Col3a1P08121 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col3a1P08121 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col3a1P08121 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC18.99■□□□□ 0.63
Col3a1P08121 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC18.99■□□□□ 0.63
Col3a1P08121 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC18.99■□□□□ 0.63
Col3a1P08121 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC18.99■□□□□ 0.63
Col3a1P08121 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col3a1P08121 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Col3a1P08121 Gm5366-201ENSMUST00000215494 1338 ntBASIC18.99■□□□□ 0.63
Col3a1P08121 AC119177.1-201ENSMUST00000227647 1332 ntBASIC18.99■□□□□ 0.63
Col3a1P08121 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col3a1P08121 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC18.99■□□□□ 0.63
Col3a1P08121 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Col3a1P08121 Gm43548-201ENSMUST00000197139 2353 ntBASIC18.99■□□□□ 0.63
Col3a1P08121 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Col3a1P08121 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col3a1P08121 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col3a1P08121 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col3a1P08121 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Gm14822-201ENSMUST00000122247 291 ntBASIC18.98■□□□□ 0.63
Col3a1P08121 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Gm24513-201ENSMUST00000174964 138 ntBASIC18.98■□□□□ 0.63
Col3a1P08121 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC18.98■□□□□ 0.63
Col3a1P08121 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Col3a1P08121 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Col3a1P08121 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC18.98■□□□□ 0.63
Col3a1P08121 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Col3a1P08121 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col3a1P08121 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Col3a1P08121 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col3a1P08121 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col3a1P08121 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Col3a1P08121 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC18.97■□□□□ 0.63
Col3a1P08121 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col3a1P08121 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col3a1P08121 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col3a1P08121 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col3a1P08121 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
Col3a1P08121 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col3a1P08121 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms