Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
Lmx1bO88609 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC14.48□□□□□ -0.09
Lmx1bO88609 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC14.48□□□□□ -0.09
Lmx1bO88609 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.48□□□□□ -0.09
Lmx1bO88609 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Lmx1bO88609 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Lmx1bO88609 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
Lmx1bO88609 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Lmx1bO88609 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
Lmx1bO88609 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC14.48□□□□□ -0.09
Lmx1bO88609 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC14.48□□□□□ -0.09
Lmx1bO88609 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm42918-201ENSMUST00000199249 1580 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC14.47□□□□□ -0.09
Lmx1bO88609 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Lmx1bO88609 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
Lmx1bO88609 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC14.47□□□□□ -0.09
Lmx1bO88609 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm25745-201ENSMUST00000174945 133 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC14.47□□□□□ -0.09
Lmx1bO88609 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm44357-201ENSMUST00000195897 142 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm19658-201ENSMUST00000196231 138 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm44367-201ENSMUST00000196836 138 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm44350-201ENSMUST00000197197 138 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm44390-201ENSMUST00000197533 144 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm44313-201ENSMUST00000198018 138 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm44486-201ENSMUST00000198508 138 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm44314-201ENSMUST00000199263 138 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm44394-201ENSMUST00000199558 138 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm44484-201ENSMUST00000199873 138 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm44466-201ENSMUST00000200264 138 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm44359-201ENSMUST00000200671 138 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm6296-201ENSMUST00000222599 943 ntBASIC14.47□□□□□ -0.09
Lmx1bO88609 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC14.47□□□□□ -0.09
Lmx1bO88609 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Lmx1bO88609 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Lmx1bO88609 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Lmx1bO88609 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Lmx1bO88609 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC14.46□□□□□ -0.09
Lmx1bO88609 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC14.46□□□□□ -0.09
Lmx1bO88609 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms