Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Hmgb3O54879 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Gm45203-201ENSMUST00000206384 1831 ntBASIC13.32□□□□□ -0.28
Hmgb3O54879 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC13.32□□□□□ -0.28
Hmgb3O54879 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Hmgb3O54879 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Hmgb3O54879 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Alkbh1-212ENSMUST00000185301 408 ntBASIC13.32□□□□□ -0.28
Hmgb3O54879 Gm4974-201ENSMUST00000209974 875 ntBASIC13.32□□□□□ -0.28
Hmgb3O54879 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC13.32□□□□□ -0.28
Hmgb3O54879 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
Hmgb3O54879 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Hmgb3O54879 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC13.32□□□□□ -0.28
Hmgb3O54879 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
Hmgb3O54879 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Hmgb3O54879 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Hmgb3O54879 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Hmgb3O54879 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC13.31□□□□□ -0.28
Hmgb3O54879 Gm26571-201ENSMUST00000181399 666 ntBASIC13.31□□□□□ -0.28
Hmgb3O54879 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC13.31□□□□□ -0.28
Hmgb3O54879 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 AC166341.7-201ENSMUST00000221698 126 ntBASIC13.31□□□□□ -0.28
Hmgb3O54879 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Hmgb3O54879 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Hmgb3O54879 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
Hmgb3O54879 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Hmgb3O54879 App-207ENSMUST00000227737 2827 ntBASIC13.31□□□□□ -0.28
Hmgb3O54879 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC13.3□□□□□ -0.28
Hmgb3O54879 Gm10849-201ENSMUST00000100397 618 ntBASIC13.3□□□□□ -0.28
Hmgb3O54879 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC13.3□□□□□ -0.28
Hmgb3O54879 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC13.3□□□□□ -0.28
Hmgb3O54879 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Gm2559-201ENSMUST00000201323 363 ntBASIC13.3□□□□□ -0.28
Hmgb3O54879 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC13.3□□□□□ -0.28
Hmgb3O54879 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Hmgb3O54879 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC13.3□□□□□ -0.28
Hmgb3O54879 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
Hmgb3O54879 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Hmgb3O54879 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC13.3□□□□□ -0.28
Hmgb3O54879 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
Hmgb3O54879 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC13.3□□□□□ -0.28
Hmgb3O54879 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Hmgb3O54879 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms