Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 RPL39P39-201ENST00000455840 151 ntBASIC2.04□□□□□ -2.08
LIMS1P48059 U1.36-201ENST00000620684 176 ntBASIC2.04□□□□□ -2.08
LIMS1P48059 AC008133.2-201ENST00000624540 351 ntBASIC2.04□□□□□ -2.08
LIMS1P48059 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
LIMS1P48059 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
LIMS1P48059 AL359851.1-201ENST00000569460 4997 ntBASIC2.03□□□□□ -2.08
LIMS1P48059 RNA5SP37-201ENST00000365420 130 ntBASIC2.03□□□□□ -2.08
LIMS1P48059 SNORD58A-201ENST00000383875 65 ntBASIC2.03□□□□□ -2.08
LIMS1P48059 U8.15-201ENST00000390947 134 ntBASIC2.03□□□□□ -2.08
LIMS1P48059 SNORD23.1-201ENST00000408212 104 ntBASIC2.03□□□□□ -2.08
LIMS1P48059 RNU6-602P-201ENST00000411155 105 ntBASIC2.03□□□□□ -2.08
LIMS1P48059 RNA5SP450-201ENST00000411206 102 ntBASIC2.03□□□□□ -2.08
LIMS1P48059 AL445685.2-201ENST00000422551 342 ntBASIC2.03□□□□□ -2.08
LIMS1P48059 AC090255.1-201ENST00000495779 349 ntBASIC2.03□□□□□ -2.08
LIMS1P48059 RNU6-917P-201ENST00000516294 104 ntBASIC2.03□□□□□ -2.08
LIMS1P48059 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.03□□□□□ -2.08
LIMS1P48059 RNU6-1123P-201ENST00000362347 106 ntBASIC2.02□□□□□ -2.09
LIMS1P48059 SNORD38.1-201ENST00000363863 68 ntBASIC2.02□□□□□ -2.09
LIMS1P48059 RNU6-1163P-201ENST00000364516 107 ntBASIC2.02□□□□□ -2.09
LIMS1P48059 RNU6-787P-201ENST00000384032 107 ntBASIC2.02□□□□□ -2.09
LIMS1P48059 Y_RNA.620-201ENST00000411009 88 ntBASIC2.02□□□□□ -2.09
LIMS1P48059 AC245047.7-201ENST00000440265 293 ntBASIC2.02□□□□□ -2.09
LIMS1P48059 MIR1273D-201ENST00000577266 86 ntBASIC2.02□□□□□ -2.09
LIMS1P48059 MIR4764-201ENST00000580680 88 ntBASIC2.02□□□□□ -2.09
LIMS1P48059 MIR5588-201ENST00000581890 63 ntBASIC2.02□□□□□ -2.09
LIMS1P48059 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
LIMS1P48059 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
LIMS1P48059 Y_RNA.354-201ENST00000365448 111 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 RNU6-242P-201ENST00000384359 107 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 MIR34C-201ENST00000384831 77 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 RNU6-360P-201ENST00000390944 104 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 RNU6-482P-201ENST00000391068 107 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 SNORA48.3-201ENST00000391081 134 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 AL023284.1-201ENST00000403956 276 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 RNA5SP338-201ENST00000410495 85 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 RN7SKP223-201ENST00000410582 62 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 RNA5SP225-201ENST00000410874 135 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 RNU6-717P-201ENST00000459076 104 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 RNU7-171P-201ENST00000459581 62 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 RNU6-267P-201ENST00000516714 103 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 SNORA31.17-201ENST00000516953 127 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 SNORA31.25-201ENST00000517242 134 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 MIR4668-201ENST00000582284 70 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 SEPT14P17-201ENST00000617978 177 ntBASIC2.01□□□□□ -2.09
LIMS1P48059 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
LIMS1P48059 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
LIMS1P48059 MIR194-1-201ENST00000384892 85 ntBASIC2□□□□□ -2.09
LIMS1P48059 MIR1255A-201ENST00000408338 113 ntBASIC2□□□□□ -2.09
LIMS1P48059 RNU6-1086P-201ENST00000410930 100 ntBASIC2□□□□□ -2.09
LIMS1P48059 RNA5SP270-201ENST00000411361 118 ntBASIC2□□□□□ -2.09
LIMS1P48059 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2□□□□□ -2.09
LIMS1P48059 AC108210.2-201ENST00000503681 201 ntBASIC2□□□□□ -2.09
LIMS1P48059 RNA5SP200-201ENST00000516360 103 ntBASIC2□□□□□ -2.09
LIMS1P48059 SNORD67.1-201ENST00000516618 108 ntBASIC2□□□□□ -2.09
LIMS1P48059 GS1-279B7.1-204ENST00000641809 378 ntBASIC2□□□□□ -2.09
LIMS1P48059 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
LIMS1P48059 RNA5SP289-201ENST00000362332 137 ntBASIC1.99□□□□□ -2.09
LIMS1P48059 RNU4-52P-201ENST00000384209 138 ntBASIC1.99□□□□□ -2.09
LIMS1P48059 MIR17-201ENST00000385012 84 ntBASIC1.99□□□□□ -2.09
LIMS1P48059 MIR221-201ENST00000385135 110 ntBASIC1.99□□□□□ -2.09
LIMS1P48059 MIR653-201ENST00000385279 96 ntBASIC1.99□□□□□ -2.09
LIMS1P48059 RNU7-137P-201ENST00000516788 62 ntBASIC1.99□□□□□ -2.09
LIMS1P48059 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.99□□□□□ -2.09
LIMS1P48059 MIR4666B-201ENST00000578142 81 ntBASIC1.99□□□□□ -2.09
LIMS1P48059 SNORD114-10-201ENST00000363409 72 ntBASIC1.98□□□□□ -2.09
LIMS1P48059 RNU6-1244P-201ENST00000363614 108 ntBASIC1.98□□□□□ -2.09
LIMS1P48059 RNU6-203P-201ENST00000384038 104 ntBASIC1.98□□□□□ -2.09
LIMS1P48059 AC025033.1-201ENST00000463883 194 ntBASIC1.98□□□□□ -2.09
LIMS1P48059 RNU7-79P-201ENST00000516082 62 ntBASIC1.98□□□□□ -2.09
LIMS1P48059 MIR548AO-201ENST00000579992 96 ntBASIC1.98□□□□□ -2.09
LIMS1P48059 AC103810.7-201ENST00000607821 91 ntBASIC1.98□□□□□ -2.09
LIMS1P48059 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
LIMS1P48059 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
LIMS1P48059 Y_RNA.448-201ENST00000384185 108 ntBASIC1.97□□□□□ -2.09
LIMS1P48059 MIR520C-201ENST00000385005 87 ntBASIC1.97□□□□□ -2.09
LIMS1P48059 RNU6-1321P-201ENST00000390905 107 ntBASIC1.97□□□□□ -2.09
LIMS1P48059 RNU6-279P-201ENST00000391297 101 ntBASIC1.97□□□□□ -2.09
LIMS1P48059 AL161935.2-201ENST00000414627 60 ntBASIC1.97□□□□□ -2.09
LIMS1P48059 CYP3A52P-201ENST00000563326 91 ntBASIC1.97□□□□□ -2.09
LIMS1P48059 RNU6-86P-201ENST00000606534 107 ntBASIC1.97□□□□□ -2.09
LIMS1P48059 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.97□□□□□ -2.09
LIMS1P48059 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.97□□□□□ -2.09
LIMS1P48059 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
LIMS1P48059 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.09
LIMS1P48059 RNA5SP160-201ENST00000364866 120 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 RNA5SP138-201ENST00000365098 114 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 RNU6-447P-201ENST00000410293 104 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 RNU6-1118P-201ENST00000410382 104 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 RNU6-1076P-201ENST00000410397 104 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 RNU6-355P-201ENST00000410427 104 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 RNU6-791P-201ENST00000410467 104 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 RNU6-705P-201ENST00000410601 104 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 RNU6-1100P-201ENST00000410691 104 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 RNU6-860P-201ENST00000410860 104 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 RNU6-1217P-201ENST00000411276 104 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 RNU6-785P-201ENST00000411324 104 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 AL356379.1-201ENST00000414105 126 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 RPS29P28-201ENST00000446439 141 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 AC015712.3-201ENST00000559380 164 ntBASIC1.96□□□□□ -2.1
LIMS1P48059 U6.90-201ENST00000614007 104 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 203.2 ms