Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MIR548A1-201ENST00000385041 97 ntBASIC1.25□□□□□ -2.21
HOXD3P31249 SNORD12C-201ENST00000386307 89 ntBASIC1.25□□□□□ -2.21
HOXD3P31249 AL022718.1-201ENST00000412004 84 ntBASIC1.25□□□□□ -2.21
HOXD3P31249 RPS3AP1-201ENST00000413190 320 ntBASIC1.25□□□□□ -2.21
HOXD3P31249 AC245517.4-201ENST00000448601 281 ntBASIC1.25□□□□□ -2.21
HOXD3P31249 RN7SKP88-201ENST00000516847 250 ntBASIC1.25□□□□□ -2.21
HOXD3P31249 AP003716.2-201ENST00000528260 108 ntBASIC1.25□□□□□ -2.21
HOXD3P31249 7SK.8-201ENST00000612110 250 ntBASIC1.25□□□□□ -2.21
HOXD3P31249 7SK.11-201ENST00000615477 250 ntBASIC1.25□□□□□ -2.21
HOXD3P31249 7SK.13-201ENST00000622040 250 ntBASIC1.25□□□□□ -2.21
HOXD3P31249 RNA5SP48-201ENST00000363969 126 ntBASIC1.24□□□□□ -2.21
HOXD3P31249 Y_RNA.466-201ENST00000384294 113 ntBASIC1.24□□□□□ -2.21
HOXD3P31249 Y_RNA.531-201ENST00000384589 121 ntBASIC1.24□□□□□ -2.21
HOXD3P31249 MIR499A-201ENST00000384903 122 ntBASIC1.24□□□□□ -2.21
HOXD3P31249 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.24□□□□□ -2.21
HOXD3P31249 RNU1-92P-201ENST00000517017 135 ntBASIC1.24□□□□□ -2.21
HOXD3P31249 RNU6-902P-201ENST00000517212 91 ntBASIC1.24□□□□□ -2.21
HOXD3P31249 MTND5P34-201ENST00000568888 325 ntBASIC1.24□□□□□ -2.21
HOXD3P31249 MIR8065-201ENST00000620577 100 ntBASIC1.24□□□□□ -2.21
HOXD3P31249 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.23□□□□□ -2.21
HOXD3P31249 RNA5SP264-201ENST00000363115 107 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 RNU6-654P-201ENST00000364373 107 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 Y_RNA.346-201ENST00000365385 112 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 Y_RNA.430-201ENST00000384081 110 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 Y_RNA.508-201ENST00000384502 114 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 RNU6-429P-201ENST00000384582 108 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 RNU6-1237P-201ENST00000384777 107 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 RNA5SP95-201ENST00000410319 137 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 RNA5SP136-201ENST00000410906 107 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 RNU7-113P-201ENST00000459273 62 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 RPL30P7-201ENST00000479312 323 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.23□□□□□ -2.21
HOXD3P31249 MIR6129-201ENST00000616087 109 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 AL121890.5-201ENST00000620848 304 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 MIR6516-201ENST00000630554 81 ntBASIC1.23□□□□□ -2.21
HOXD3P31249 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
HOXD3P31249 MIR103A2-201ENST00000362154 78 ntBASIC1.22□□□□□ -2.21
HOXD3P31249 Y_RNA.198-201ENST00000364013 98 ntBASIC1.22□□□□□ -2.21
HOXD3P31249 Y_RNA.327-201ENST00000365201 102 ntBASIC1.22□□□□□ -2.21
HOXD3P31249 Y_RNA.363-201ENST00000365529 113 ntBASIC1.22□□□□□ -2.21
HOXD3P31249 RNU6-342P-201ENST00000384521 104 ntBASIC1.22□□□□□ -2.21
HOXD3P31249 SNORD20-201ENST00000384550 80 ntBASIC1.22□□□□□ -2.21
HOXD3P31249 SNORA67.6-201ENST00000391093 99 ntBASIC1.22□□□□□ -2.21
HOXD3P31249 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.22□□□□□ -2.21
HOXD3P31249 RNA5SP261-201ENST00000410536 106 ntBASIC1.22□□□□□ -2.21
HOXD3P31249 AC245047.7-201ENST00000440265 293 ntBASIC1.22□□□□□ -2.21
HOXD3P31249 Y_RNA.649-201ENST00000459077 103 ntBASIC1.22□□□□□ -2.21
HOXD3P31249 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.22□□□□□ -2.21
HOXD3P31249 RNA5SP33-201ENST00000516687 98 ntBASIC1.22□□□□□ -2.21
HOXD3P31249 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.21□□□□□ -2.22
HOXD3P31249 RNU6-60P-201ENST00000364792 103 ntBASIC1.21□□□□□ -2.22
HOXD3P31249 SNORA32-201ENST00000384072 121 ntBASIC1.21□□□□□ -2.22
HOXD3P31249 SNORD38B-201ENST00000384690 67 ntBASIC1.21□□□□□ -2.22
HOXD3P31249 MIR548A3-201ENST00000385297 97 ntBASIC1.21□□□□□ -2.22
HOXD3P31249 RNU6-205P-201ENST00000390858 107 ntBASIC1.21□□□□□ -2.22
HOXD3P31249 RNU6-1054P-201ENST00000411293 104 ntBASIC1.21□□□□□ -2.22
HOXD3P31249 RPS29P23-201ENST00000458635 123 ntBASIC1.21□□□□□ -2.22
HOXD3P31249 MIR1270-201ENST00000459320 83 ntBASIC1.21□□□□□ -2.22
HOXD3P31249 COX6CP6-201ENST00000490840 228 ntBASIC1.21□□□□□ -2.22
HOXD3P31249 AC113410.1-201ENST00000505029 247 ntBASIC1.21□□□□□ -2.22
HOXD3P31249 SNORA31.2-201ENST00000516019 134 ntBASIC1.21□□□□□ -2.22
HOXD3P31249 SNORD38B-202ENST00000625943 69 ntBASIC1.21□□□□□ -2.22
HOXD3P31249 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.21□□□□□ -2.22
HOXD3P31249 U6.95-201ENST00000636931 70 ntBASIC1.21□□□□□ -2.22
HOXD3P31249 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
HOXD3P31249 Y_RNA.224-201ENST00000364308 111 ntBASIC1.2□□□□□ -2.22
HOXD3P31249 RNU6-396P-201ENST00000365369 105 ntBASIC1.2□□□□□ -2.22
HOXD3P31249 RNU6-1144P-201ENST00000384247 104 ntBASIC1.2□□□□□ -2.22
HOXD3P31249 MIR1323-201ENST00000408090 73 ntBASIC1.2□□□□□ -2.22
HOXD3P31249 RNU6-1064P-201ENST00000410626 104 ntBASIC1.2□□□□□ -2.22
HOXD3P31249 RNU7-6P-201ENST00000516845 62 ntBASIC1.2□□□□□ -2.22
HOXD3P31249 MIR548AE2-201ENST00000583456 67 ntBASIC1.2□□□□□ -2.22
HOXD3P31249 AL670379.3-201ENST00000605040 251 ntBASIC1.2□□□□□ -2.22
HOXD3P31249 AL157834.3-201ENST00000615543 103 ntBASIC1.2□□□□□ -2.22
HOXD3P31249 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.2□□□□□ -2.22
HOXD3P31249 SNORD115-2-201ENST00000362842 82 ntBASIC1.19□□□□□ -2.22
HOXD3P31249 RNU6-1325P-201ENST00000364905 105 ntBASIC1.19□□□□□ -2.22
HOXD3P31249 SNORD115-20-201ENST00000365099 82 ntBASIC1.19□□□□□ -2.22
HOXD3P31249 RNU6-476P-201ENST00000384726 107 ntBASIC1.19□□□□□ -2.22
HOXD3P31249 MIR517C-201ENST00000385103 95 ntBASIC1.19□□□□□ -2.22
HOXD3P31249 Y_RNA.629-201ENST00000411368 105 ntBASIC1.19□□□□□ -2.22
HOXD3P31249 RPS23P4-201ENST00000487908 423 ntBASIC1.19□□□□□ -2.22
HOXD3P31249 uc_338.6-201ENST00000613544 171 ntBASIC1.19□□□□□ -2.22
HOXD3P31249 Y_RNA.35-201ENST00000362601 101 ntBASIC1.18□□□□□ -2.22
HOXD3P31249 SNORA7.1-201ENST00000363750 139 ntBASIC1.18□□□□□ -2.22
HOXD3P31249 Y_RNA.273-201ENST00000364703 102 ntBASIC1.18□□□□□ -2.22
HOXD3P31249 Y_RNA.330-201ENST00000365230 109 ntBASIC1.18□□□□□ -2.22
HOXD3P31249 Y_RNA.355-201ENST00000365462 98 ntBASIC1.18□□□□□ -2.22
HOXD3P31249 RNU6-1056P-201ENST00000383996 107 ntBASIC1.18□□□□□ -2.22
HOXD3P31249 SNORA18-201ENST00000384416 132 ntBASIC1.18□□□□□ -2.22
HOXD3P31249 Y_RNA.549-201ENST00000384657 102 ntBASIC1.18□□□□□ -2.22
HOXD3P31249 SNORA75.2-201ENST00000391138 150 ntBASIC1.18□□□□□ -2.22
HOXD3P31249 SNORA75.3-201ENST00000391231 150 ntBASIC1.18□□□□□ -2.22
HOXD3P31249 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.18□□□□□ -2.22
HOXD3P31249 RNU6-893P-201ENST00000458841 100 ntBASIC1.18□□□□□ -2.22
HOXD3P31249 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.18□□□□□ -2.22
HOXD3P31249 AC007012.1-201ENST00000567192 175 ntBASIC1.18□□□□□ -2.22
HOXD3P31249 MIR6740-201ENST00000618268 113 ntBASIC1.18□□□□□ -2.22
HOXD3P31249 AC087741.2-201ENST00000619415 172 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 226.7 ms