Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 MIR4308-201ENST00000580634 81 ntBASIC0.69□□□□□ -2.3
NPHP1O15259 MIR4503-201ENST00000582187 83 ntBASIC0.69□□□□□ -2.3
NPHP1O15259 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.68□□□□□ -2.3
NPHP1O15259 Y_RNA.85-201ENST00000363014 111 ntBASIC0.68□□□□□ -2.3
NPHP1O15259 RNA5SP499-201ENST00000363982 119 ntBASIC0.68□□□□□ -2.3
NPHP1O15259 RNU6-978P-201ENST00000364371 103 ntBASIC0.68□□□□□ -2.3
NPHP1O15259 RNU6-923P-201ENST00000364753 107 ntBASIC0.68□□□□□ -2.3
NPHP1O15259 MIR563-201ENST00000385080 79 ntBASIC0.68□□□□□ -2.3
NPHP1O15259 SNORA26.6-201ENST00000391256 115 ntBASIC0.68□□□□□ -2.3
NPHP1O15259 Y_RNA.797-201ENST00000515977 94 ntBASIC0.68□□□□□ -2.3
NPHP1O15259 RNU6-1023P-201ENST00000516137 106 ntBASIC0.68□□□□□ -2.3
NPHP1O15259 SNORD116-25-201ENST00000516517 92 ntBASIC0.68□□□□□ -2.3
NPHP1O15259 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.68□□□□□ -2.3
NPHP1O15259 MIR378D2-201ENST00000580636 98 ntBASIC0.68□□□□□ -2.3
NPHP1O15259 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
NPHP1O15259 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
NPHP1O15259 MIR302B-201ENST00000362188 73 ntBASIC0.67□□□□□ -2.3
NPHP1O15259 RNU6-702P-201ENST00000364982 107 ntBASIC0.67□□□□□ -2.3
NPHP1O15259 RNU6-1237P-201ENST00000384777 107 ntBASIC0.67□□□□□ -2.3
NPHP1O15259 MIR92A1-201ENST00000385233 78 ntBASIC0.67□□□□□ -2.3
NPHP1O15259 MIR140-201ENST00000385282 100 ntBASIC0.67□□□□□ -2.3
NPHP1O15259 RNU7-80P-201ENST00000459562 61 ntBASIC0.67□□□□□ -2.3
NPHP1O15259 RNU4-71P-201ENST00000516258 113 ntBASIC0.67□□□□□ -2.3
NPHP1O15259 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.67□□□□□ -2.3
NPHP1O15259 MIR3612-201ENST00000579753 87 ntBASIC0.67□□□□□ -2.3
NPHP1O15259 AL109933.3-201ENST00000619095 188 ntBASIC0.67□□□□□ -2.3
NPHP1O15259 MIR6717-201ENST00000622747 73 ntBASIC0.67□□□□□ -2.3
NPHP1O15259 Y_RNA.60-201ENST00000362831 98 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 Y_RNA.251-201ENST00000364551 99 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 Y_RNA.447-201ENST00000384184 113 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 RNU6-196P-201ENST00000384315 107 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 Y_RNA.571-201ENST00000384753 98 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 SNORD12C-201ENST00000386307 89 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 MIR938-201ENST00000401216 83 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 AC114737.2-201ENST00000421583 173 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 AL157398.1-201ENST00000452981 186 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 RNU7-45P-201ENST00000459460 63 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 RNU6-111P-201ENST00000517179 105 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 AC243829.6-201ENST00000612652 106 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 uc_338.17-201ENST00000619633 179 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 AC091932.4-201ENST00000623386 200 ntBASIC0.66□□□□□ -2.3
NPHP1O15259 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
NPHP1O15259 MIR330-201ENST00000362196 94 ntBASIC0.65□□□□□ -2.31
NPHP1O15259 MIR18A-201ENST00000362310 71 ntBASIC0.65□□□□□ -2.31
NPHP1O15259 Y_RNA.193-201ENST00000363979 102 ntBASIC0.65□□□□□ -2.31
NPHP1O15259 Y_RNA.452-201ENST00000384202 108 ntBASIC0.65□□□□□ -2.31
NPHP1O15259 Y_RNA.454-201ENST00000384224 113 ntBASIC0.65□□□□□ -2.31
NPHP1O15259 AL353621.2-201ENST00000605340 133 ntBASIC0.65□□□□□ -2.31
NPHP1O15259 Y_RNA.182-201ENST00000363880 111 ntBASIC0.64□□□□□ -2.31
NPHP1O15259 SNORA20.1-201ENST00000364790 130 ntBASIC0.64□□□□□ -2.31
NPHP1O15259 Y_RNA.307-201ENST00000365022 117 ntBASIC0.64□□□□□ -2.31
NPHP1O15259 RNU4-45P-201ENST00000365469 141 ntBASIC0.64□□□□□ -2.31
NPHP1O15259 RNU6-643P-201ENST00000384018 107 ntBASIC0.64□□□□□ -2.31
NPHP1O15259 RNU4-70P-201ENST00000384579 139 ntBASIC0.64□□□□□ -2.31
NPHP1O15259 MIR125B2-201ENST00000385128 89 ntBASIC0.64□□□□□ -2.31
NPHP1O15259 MIR1197-201ENST00000408818 88 ntBASIC0.64□□□□□ -2.31
NPHP1O15259 RNA5SP261-201ENST00000410536 106 ntBASIC0.64□□□□□ -2.31
NPHP1O15259 SEPT7P4-201ENST00000437076 306 ntBASIC0.64□□□□□ -2.31
NPHP1O15259 RNU7-185P-201ENST00000459215 60 ntBASIC0.64□□□□□ -2.31
NPHP1O15259 MIR3149-201ENST00000584629 83 ntBASIC0.64□□□□□ -2.31
NPHP1O15259 Z83818.1-201ENST00000603584 150 ntBASIC0.64□□□□□ -2.31
NPHP1O15259 RNU6-275P-201ENST00000364910 107 ntBASIC0.63□□□□□ -2.31
NPHP1O15259 RNU6-574P-201ENST00000384265 107 ntBASIC0.63□□□□□ -2.31
NPHP1O15259 RNU6-1319P-201ENST00000390855 104 ntBASIC0.63□□□□□ -2.31
NPHP1O15259 RNU6-747P-201ENST00000390928 104 ntBASIC0.63□□□□□ -2.31
NPHP1O15259 RNU6-241P-201ENST00000391148 104 ntBASIC0.63□□□□□ -2.31
NPHP1O15259 RN7SKP12-201ENST00000516275 143 ntBASIC0.63□□□□□ -2.31
NPHP1O15259 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.63□□□□□ -2.31
NPHP1O15259 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.63□□□□□ -2.31
NPHP1O15259 AL596211.1-201ENST00000569873 2277 ntBASIC0.63□□□□□ -2.31
NPHP1O15259 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.62□□□□□ -2.31
NPHP1O15259 MIR30D-201ENST00000362283 70 ntBASIC0.62□□□□□ -2.31
NPHP1O15259 Y_RNA.430-201ENST00000384081 110 ntBASIC0.62□□□□□ -2.31
NPHP1O15259 MIR624-201ENST00000385217 97 ntBASIC0.62□□□□□ -2.31
NPHP1O15259 MT-TF-201ENST00000387314 71 ntBASIC0.62□□□□□ -2.31
NPHP1O15259 MIR1257-201ENST00000408490 117 ntBASIC0.62□□□□□ -2.31
NPHP1O15259 RNA5SP127-201ENST00000411051 133 ntBASIC0.62□□□□□ -2.31
NPHP1O15259 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.62□□□□□ -2.31
NPHP1O15259 SCARNA15-202ENST00000516881 127 ntBASIC0.62□□□□□ -2.31
NPHP1O15259 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.62□□□□□ -2.31
NPHP1O15259 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.62□□□□□ -2.31
NPHP1O15259 Y_RNA.75-201ENST00000362927 97 ntBASIC0.61□□□□□ -2.31
NPHP1O15259 SNORD18A-201ENST00000363753 72 ntBASIC0.61□□□□□ -2.31
NPHP1O15259 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
NPHP1O15259 Y_RNA.412-201ENST00000384001 104 ntBASIC0.61□□□□□ -2.31
NPHP1O15259 RNU6-463P-201ENST00000384340 107 ntBASIC0.61□□□□□ -2.31
NPHP1O15259 RNU6-918P-201ENST00000391219 106 ntBASIC0.61□□□□□ -2.31
NPHP1O15259 RNU7-102P-201ENST00000458948 62 ntBASIC0.61□□□□□ -2.31
NPHP1O15259 MIR3152-201ENST00000579801 74 ntBASIC0.61□□□□□ -2.31
NPHP1O15259 AC090897.1-201ENST00000580909 226 ntBASIC0.61□□□□□ -2.31
NPHP1O15259 AC008608.1-201ENST00000603910 127 ntBASIC0.61□□□□□ -2.31
NPHP1O15259 U6.106-201ENST00000636360 105 ntBASIC0.61□□□□□ -2.31
NPHP1O15259 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.61□□□□□ -2.31
NPHP1O15259 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
NPHP1O15259 MRPS18CP4-201ENST00000535821 231 ntBASIC0.6□□□□□ -2.31
NPHP1O15259 SNORD92-201ENST00000585078 85 ntBASIC0.6□□□□□ -2.31
NPHP1O15259 VTRNA1-3-201ENST00000365645 89 ntBASIC0.59□□□□□ -2.31
NPHP1O15259 Y_RNA.435-201ENST00000384095 112 ntBASIC0.59□□□□□ -2.31
NPHP1O15259 RNU6-364P-201ENST00000384387 107 ntBASIC0.59□□□□□ -2.31
NPHP1O15259 SNORD100-201ENST00000408573 76 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 174.2 ms