Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 RNU6-602P-201ENST00000411155 105 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 SNORD83.1-201ENST00000411362 77 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 HMGN1P33-201ENST00000432945 451 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 AC092628.1-201ENST00000436250 252 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 AL138752.1-201ENST00000452964 351 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 RNA5SP330-201ENST00000517096 96 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 AC011195.1-201ENST00000578177 177 ntBASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.63□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR330-201ENST00000362196 94 ntBASIC0.62□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU6-1309P-201ENST00000363305 108 ntBASIC0.62□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.133-201ENST00000363428 110 ntBASIC0.62□□□□□ -2.31
PCDHGA1Q9Y5H4 SNORA1.1-201ENST00000364671 133 ntBASIC0.62□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.542-201ENST00000384641 111 ntBASIC0.62□□□□□ -2.31
PCDHGA1Q9Y5H4 SNORA79-201ENST00000408376 140 ntBASIC0.62□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR548H3-201ENST00000408771 118 ntBASIC0.62□□□□□ -2.31
PCDHGA1Q9Y5H4 MTND5P15-201ENST00000434246 349 ntBASIC0.62□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR6740-201ENST00000618268 113 ntBASIC0.62□□□□□ -2.31
PCDHGA1Q9Y5H4 AC243829.3-201ENST00000622177 108 ntBASIC0.62□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.556-201ENST00000384677 113 ntBASIC0.61□□□□□ -2.31
PCDHGA1Q9Y5H4 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.61□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR548I3-201ENST00000408378 149 ntBASIC0.61□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.618-201ENST00000410949 107 ntBASIC0.61□□□□□ -2.31
PCDHGA1Q9Y5H4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.61□□□□□ -2.31
PCDHGA1Q9Y5H4 MTCYBP9-201ENST00000431021 303 ntBASIC0.61□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR18B-201ENST00000454574 71 ntBASIC0.61□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU6-977P-201ENST00000516411 103 ntBASIC0.61□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR8087-201ENST00000612745 78 ntBASIC0.61□□□□□ -2.31
PCDHGA1Q9Y5H4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.61□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.7-201ENST00000362352 102 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.85-201ENST00000363014 111 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.258-201ENST00000364613 105 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 RNY4P28-201ENST00000365281 93 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.351-201ENST00000365436 96 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU6-1292P-201ENST00000383856 107 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR588-201ENST00000384900 83 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 snoU13.2-201ENST00000459201 104 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU6-327P-201ENST00000516270 127 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR4771-2-201ENST00000577758 74 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR3129-201ENST00000581095 76 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR4744-201ENST00000581563 82 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR4804-201ENST00000581683 73 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR4771-1-201ENST00000582617 74 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 uc_338.6-201ENST00000613544 171 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR376A2-201ENST00000636782 80 ntBASIC0.6□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR342-201ENST00000362212 99 ntBASIC0.59□□□□□ -2.31
PCDHGA1Q9Y5H4 Y_RNA.251-201ENST00000364551 99 ntBASIC0.59□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR520F-201ENST00000384824 87 ntBASIC0.59□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR568-201ENST00000385036 95 ntBASIC0.59□□□□□ -2.31
PCDHGA1Q9Y5H4 SNORD58.1-201ENST00000391313 66 ntBASIC0.59□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU6-1190P-201ENST00000410811 104 ntBASIC0.59□□□□□ -2.31
PCDHGA1Q9Y5H4 RNU4-54P-201ENST00000516428 129 ntBASIC0.59□□□□□ -2.31
PCDHGA1Q9Y5H4 AC004817.2-201ENST00000561794 651 ntBASIC0.59□□□□□ -2.31
PCDHGA1Q9Y5H4 MIR4676-201ENST00000583078 72 ntBASIC0.59□□□□□ -2.31
PCDHGA1Q9Y5H4 AL365205.2-201ENST00000594586 68 ntBASIC0.59□□□□□ -2.31
PCDHGA1Q9Y5H4 AC020891.4-201ENST00000605745 93 ntBASIC0.59□□□□□ -2.31
PCDHGA1Q9Y5H4 AL109933.3-201ENST00000619095 188 ntBASIC0.59□□□□□ -2.31
PCDHGA1Q9Y5H4 uc_338.17-201ENST00000619633 179 ntBASIC0.59□□□□□ -2.31
PCDHGA1Q9Y5H4 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.32
PCDHGA1Q9Y5H4 MIR302B-201ENST00000362188 73 ntBASIC0.58□□□□□ -2.32
PCDHGA1Q9Y5H4 RNU4-45P-201ENST00000365469 141 ntBASIC0.58□□□□□ -2.32
PCDHGA1Q9Y5H4 SNORA26.6-201ENST00000391256 115 ntBASIC0.58□□□□□ -2.32
PCDHGA1Q9Y5H4 AC015818.7-201ENST00000428754 109 ntBASIC0.58□□□□□ -2.32
PCDHGA1Q9Y5H4 AC087499.7-201ENST00000441958 109 ntBASIC0.58□□□□□ -2.32
PCDHGA1Q9Y5H4 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.58□□□□□ -2.32
PCDHGA1Q9Y5H4 RNU7-56P-201ENST00000458744 62 ntBASIC0.58□□□□□ -2.32
PCDHGA1Q9Y5H4 RNU7-80P-201ENST00000459562 61 ntBASIC0.58□□□□□ -2.32
PCDHGA1Q9Y5H4 RNY3P16-201ENST00000516338 101 ntBASIC0.58□□□□□ -2.32
PCDHGA1Q9Y5H4 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.58□□□□□ -2.32
PCDHGA1Q9Y5H4 MIR5197-201ENST00000583721 112 ntBASIC0.58□□□□□ -2.32
PCDHGA1Q9Y5H4 MIR6717-201ENST00000622747 73 ntBASIC0.58□□□□□ -2.32
PCDHGA1Q9Y5H4 Y_RNA.20-201ENST00000362479 113 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 Y_RNA.308-201ENST00000365043 101 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 RNY1P8-201ENST00000383970 114 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 MIR573-201ENST00000384964 99 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 MIR563-201ENST00000385080 79 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 MIR520H-201ENST00000385126 88 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 SNORD12C-201ENST00000386307 89 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 RNU6-578P-201ENST00000390980 103 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 MIR1302-3-201ENST00000408128 138 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 RNU6-1165P-201ENST00000410119 107 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 RNA5SP222-201ENST00000411039 105 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 MTND2P23-201ENST00000422990 651 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 AL121914.1-201ENST00000450188 156 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 Y_RNA.668-201ENST00000516233 93 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 MIR5087-201ENST00000635826 76 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 AC010332.2-201ENST00000613083 1904 ntBASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
PCDHGA1Q9Y5H4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.56□□□□□ -2.32
PCDHGA1Q9Y5H4 Y_RNA.454-201ENST00000384224 113 ntBASIC0.56□□□□□ -2.32
PCDHGA1Q9Y5H4 RNA5SP261-201ENST00000410536 106 ntBASIC0.56□□□□□ -2.32
PCDHGA1Q9Y5H4 SCARNA15.1-201ENST00000516384 125 ntBASIC0.56□□□□□ -2.32
PCDHGA1Q9Y5H4 Y_RNA.681-201ENST00000516445 113 ntBASIC0.56□□□□□ -2.32
PCDHGA1Q9Y5H4 SNORD116-25-201ENST00000516517 92 ntBASIC0.56□□□□□ -2.32
PCDHGA1Q9Y5H4 MIR378D2-201ENST00000580636 98 ntBASIC0.56□□□□□ -2.32
PCDHGA1Q9Y5H4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.56□□□□□ -2.32
PCDHGA1Q9Y5H4 Y_RNA.121-201ENST00000363309 113 ntBASIC0.55□□□□□ -2.32
PCDHGA1Q9Y5H4 Y_RNA.539-201ENST00000384635 107 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 392.6 ms