Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 Y_RNA.60-201ENST00000362831 98 ntBASIC0.71□□□□□ -2.3
CPSF3Q9UKF6 RNU6-978P-201ENST00000364371 103 ntBASIC0.71□□□□□ -2.3
CPSF3Q9UKF6 RNU6-1292P-201ENST00000383856 107 ntBASIC0.71□□□□□ -2.3
CPSF3Q9UKF6 Y_RNA.478-201ENST00000384358 107 ntBASIC0.71□□□□□ -2.3
CPSF3Q9UKF6 SNORA26.6-201ENST00000391256 115 ntBASIC0.71□□□□□ -2.3
CPSF3Q9UKF6 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.71□□□□□ -2.3
CPSF3Q9UKF6 AC244098.3-201ENST00000424803 96 ntBASIC0.71□□□□□ -2.3
CPSF3Q9UKF6 RNU7-45P-201ENST00000459460 63 ntBASIC0.71□□□□□ -2.3
CPSF3Q9UKF6 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
CPSF3Q9UKF6 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.71□□□□□ -2.3
CPSF3Q9UKF6 MIR4771-2-201ENST00000577758 74 ntBASIC0.71□□□□□ -2.3
CPSF3Q9UKF6 MIR4771-1-201ENST00000582617 74 ntBASIC0.71□□□□□ -2.3
CPSF3Q9UKF6 Y_RNA.351-201ENST00000365436 96 ntBASIC0.7□□□□□ -2.3
CPSF3Q9UKF6 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
CPSF3Q9UKF6 RNU6-574P-201ENST00000384265 107 ntBASIC0.7□□□□□ -2.3
CPSF3Q9UKF6 MIR588-201ENST00000384900 83 ntBASIC0.7□□□□□ -2.3
CPSF3Q9UKF6 AC022709.1-201ENST00000615967 87 ntBASIC0.7□□□□□ -2.3
CPSF3Q9UKF6 AC010332.2-201ENST00000613083 1904 ntBASIC0.7□□□□□ -2.3
CPSF3Q9UKF6 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 Y_RNA.121-201ENST00000363309 113 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 Y_RNA.193-201ENST00000363979 102 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 Y_RNA.354-201ENST00000365448 111 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 Y_RNA.571-201ENST00000384753 98 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 RNU1-119P-201ENST00000391122 165 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 Y_RNA.618-201ENST00000410949 107 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 MTND5P15-201ENST00000434246 349 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 snoU13.2-201ENST00000459201 104 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 Y_RNA.797-201ENST00000515977 94 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 RNU6-1023P-201ENST00000516137 106 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 RNU6-111P-201ENST00000517179 105 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 AC011195.1-201ENST00000578177 177 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 MIR378D2-201ENST00000580636 98 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 AL353621.2-201ENST00000605340 133 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 AC020891.4-201ENST00000605745 93 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 MIR6734-201ENST00000621166 68 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 MIR6717-201ENST00000622747 73 ntBASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
CPSF3Q9UKF6 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 RNU6-702P-201ENST00000364982 107 ntBASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 Y_RNA.307-201ENST00000365022 117 ntBASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 Y_RNA.355-201ENST00000365462 98 ntBASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 Y_RNA.447-201ENST00000384184 113 ntBASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 RNU6-196P-201ENST00000384315 107 ntBASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 SNORD12C-201ENST00000386307 89 ntBASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 RNU6-1165P-201ENST00000410119 107 ntBASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 RNU4-71P-201ENST00000516258 113 ntBASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 RNU6-977P-201ENST00000516411 103 ntBASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 SNORD116-25-201ENST00000516517 92 ntBASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 MIR4676-201ENST00000583078 72 ntBASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 AC091932.4-201ENST00000623386 200 ntBASIC0.68□□□□□ -2.3
CPSF3Q9UKF6 MIR302B-201ENST00000362188 73 ntBASIC0.67□□□□□ -2.3
CPSF3Q9UKF6 Y_RNA.182-201ENST00000363880 111 ntBASIC0.67□□□□□ -2.3
CPSF3Q9UKF6 RNY1-201ENST00000364228 113 ntBASIC0.67□□□□□ -2.3
CPSF3Q9UKF6 RNU6-42P-201ENST00000384165 107 ntBASIC0.67□□□□□ -2.3
CPSF3Q9UKF6 Y_RNA.452-201ENST00000384202 108 ntBASIC0.67□□□□□ -2.3
CPSF3Q9UKF6 MIR520F-201ENST00000384824 87 ntBASIC0.67□□□□□ -2.3
CPSF3Q9UKF6 MIR563-201ENST00000385080 79 ntBASIC0.67□□□□□ -2.3
CPSF3Q9UKF6 SEPT7P4-201ENST00000437076 306 ntBASIC0.67□□□□□ -2.3
CPSF3Q9UKF6 MIR4804-201ENST00000581683 73 ntBASIC0.67□□□□□ -2.3
CPSF3Q9UKF6 RNU6-643P-201ENST00000384018 107 ntBASIC0.66□□□□□ -2.3
CPSF3Q9UKF6 MIR520H-201ENST00000385126 88 ntBASIC0.66□□□□□ -2.3
CPSF3Q9UKF6 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.66□□□□□ -2.3
CPSF3Q9UKF6 MIR18B-201ENST00000454574 71 ntBASIC0.66□□□□□ -2.3
CPSF3Q9UKF6 RNU7-80P-201ENST00000459562 61 ntBASIC0.66□□□□□ -2.3
CPSF3Q9UKF6 MIR3149-201ENST00000584629 83 ntBASIC0.66□□□□□ -2.3
CPSF3Q9UKF6 AL596211.1-201ENST00000569873 2277 ntBASIC0.66□□□□□ -2.3
CPSF3Q9UKF6 RNU6-275P-201ENST00000364910 107 ntBASIC0.65□□□□□ -2.31
CPSF3Q9UKF6 Y_RNA.412-201ENST00000384001 104 ntBASIC0.65□□□□□ -2.31
CPSF3Q9UKF6 Y_RNA.508-201ENST00000384502 114 ntBASIC0.65□□□□□ -2.31
CPSF3Q9UKF6 RNU4-70P-201ENST00000384579 139 ntBASIC0.65□□□□□ -2.31
CPSF3Q9UKF6 MIR573-201ENST00000384964 99 ntBASIC0.65□□□□□ -2.31
CPSF3Q9UKF6 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.65□□□□□ -2.31
CPSF3Q9UKF6 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.64□□□□□ -2.31
CPSF3Q9UKF6 MIR30D-201ENST00000362283 70 ntBASIC0.64□□□□□ -2.31
CPSF3Q9UKF6 SNORA20.1-201ENST00000364790 130 ntBASIC0.64□□□□□ -2.31
CPSF3Q9UKF6 RNU1-133P-201ENST00000364867 167 ntBASIC0.64□□□□□ -2.31
CPSF3Q9UKF6 RNU6-597P-201ENST00000365620 102 ntBASIC0.64□□□□□ -2.31
CPSF3Q9UKF6 Y_RNA.454-201ENST00000384224 113 ntBASIC0.64□□□□□ -2.31
CPSF3Q9UKF6 RNU6-918P-201ENST00000391219 106 ntBASIC0.64□□□□□ -2.31
CPSF3Q9UKF6 RNU6-733P-201ENST00000410759 104 ntBASIC0.64□□□□□ -2.31
CPSF3Q9UKF6 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.64□□□□□ -2.31
CPSF3Q9UKF6 SCARNA15-202ENST00000516881 127 ntBASIC0.64□□□□□ -2.31
CPSF3Q9UKF6 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.63□□□□□ -2.31
CPSF3Q9UKF6 RNY1P8-201ENST00000383970 114 ntBASIC0.63□□□□□ -2.31
CPSF3Q9UKF6 RNU6-1319P-201ENST00000390855 104 ntBASIC0.63□□□□□ -2.31
CPSF3Q9UKF6 RNU6-747P-201ENST00000390928 104 ntBASIC0.63□□□□□ -2.31
CPSF3Q9UKF6 RNU6-241P-201ENST00000391148 104 ntBASIC0.63□□□□□ -2.31
CPSF3Q9UKF6 RNA5SP222-201ENST00000411039 105 ntBASIC0.63□□□□□ -2.31
CPSF3Q9UKF6 RNA5SP127-201ENST00000411051 133 ntBASIC0.63□□□□□ -2.31
CPSF3Q9UKF6 RNU6-177P-201ENST00000411257 104 ntBASIC0.63□□□□□ -2.31
CPSF3Q9UKF6 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.63□□□□□ -2.31
CPSF3Q9UKF6 RNU7-56P-201ENST00000458744 62 ntBASIC0.63□□□□□ -2.31
CPSF3Q9UKF6 AC004817.2-201ENST00000561794 651 ntBASIC0.63□□□□□ -2.31
CPSF3Q9UKF6 U6.106-201ENST00000636360 105 ntBASIC0.63□□□□□ -2.31
CPSF3Q9UKF6 RNA5SP499-201ENST00000363982 119 ntBASIC0.62□□□□□ -2.31
CPSF3Q9UKF6 Y_RNA.430-201ENST00000384081 110 ntBASIC0.62□□□□□ -2.31
CPSF3Q9UKF6 RNU6-463P-201ENST00000384340 107 ntBASIC0.62□□□□□ -2.31
CPSF3Q9UKF6 MIR624-201ENST00000385217 97 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 166.9 ms