Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.6□□□□□ -2.31
VPS28Q9UK41 RNU7-56P-201ENST00000458744 62 ntBASIC0.6□□□□□ -2.31
VPS28Q9UK41 RNU6-1132P-201ENST00000459214 107 ntBASIC0.6□□□□□ -2.31
VPS28Q9UK41 RNA5SP436-201ENST00000516020 115 ntBASIC0.6□□□□□ -2.31
VPS28Q9UK41 Y_RNA.47-201ENST00000362697 108 ntBASIC0.59□□□□□ -2.31
VPS28Q9UK41 RNY1-201ENST00000364228 113 ntBASIC0.59□□□□□ -2.31
VPS28Q9UK41 Y_RNA.277-201ENST00000364754 102 ntBASIC0.59□□□□□ -2.31
VPS28Q9UK41 MIR489-201ENST00000384923 84 ntBASIC0.59□□□□□ -2.31
VPS28Q9UK41 MIR563-201ENST00000385080 79 ntBASIC0.59□□□□□ -2.31
VPS28Q9UK41 SNORD12C-201ENST00000386307 89 ntBASIC0.59□□□□□ -2.31
VPS28Q9UK41 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.59□□□□□ -2.31
VPS28Q9UK41 RNU6-561P-201ENST00000516222 102 ntBASIC0.59□□□□□ -2.31
VPS28Q9UK41 MIR3612-201ENST00000579753 87 ntBASIC0.59□□□□□ -2.31
VPS28Q9UK41 AL365205.2-201ENST00000594586 68 ntBASIC0.59□□□□□ -2.31
VPS28Q9UK41 MIR6717-201ENST00000622747 73 ntBASIC0.59□□□□□ -2.31
VPS28Q9UK41 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
VPS28Q9UK41 RNA5SP347-201ENST00000362445 119 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 Y_RNA.288-201ENST00000364854 92 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 Y_RNA.292-201ENST00000364904 97 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 RNU6-1292P-201ENST00000383856 107 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 RNY1P8-201ENST00000383970 114 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 Y_RNA.459-201ENST00000384251 102 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 RNU6-364P-201ENST00000384387 107 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 RNU6-738P-201ENST00000384531 106 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 RNU6-1011P-201ENST00000384668 107 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 MIR125B2-201ENST00000385128 89 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 MIR92A1-201ENST00000385233 78 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 Y_RNA.618-201ENST00000410949 107 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 RNU7-185P-201ENST00000459215 60 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 MIR4643-201ENST00000577473 78 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 uc_338.17-201ENST00000619633 179 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 MIR376A2-201ENST00000636782 80 ntBASIC0.58□□□□□ -2.32
VPS28Q9UK41 MIR18A-201ENST00000362310 71 ntBASIC0.57□□□□□ -2.32
VPS28Q9UK41 SNORA26.6-201ENST00000391256 115 ntBASIC0.57□□□□□ -2.32
VPS28Q9UK41 RNU2-38P-201ENST00000410856 79 ntBASIC0.57□□□□□ -2.32
VPS28Q9UK41 MIR4744-201ENST00000581563 82 ntBASIC0.57□□□□□ -2.32
VPS28Q9UK41 AC011921.3-201ENST00000605540 361 ntBASIC0.57□□□□□ -2.32
VPS28Q9UK41 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.57□□□□□ -2.32
VPS28Q9UK41 MIR6513-201ENST00000621188 64 ntBASIC0.57□□□□□ -2.32
VPS28Q9UK41 Y_RNA.76-201ENST00000362931 109 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RNU6-1319P-201ENST00000390855 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RNU6-747P-201ENST00000390928 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RNU6-241P-201ENST00000391148 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RNU6-447P-201ENST00000410293 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RNU6-1118P-201ENST00000410382 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RNU6-1076P-201ENST00000410397 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RNU6-355P-201ENST00000410427 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RNU6-791P-201ENST00000410467 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RNU6-705P-201ENST00000410601 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RNU6-1100P-201ENST00000410691 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RNU6-860P-201ENST00000410860 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RNU6-1217P-201ENST00000411276 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RNU6-785P-201ENST00000411324 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 AL121914.1-201ENST00000450188 156 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 RN7SKP12-201ENST00000516275 143 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 U6.90-201ENST00000614007 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 U6.70-201ENST00000620287 104 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 AC091932.4-201ENST00000623386 200 ntBASIC0.56□□□□□ -2.32
VPS28Q9UK41 MIR30D-201ENST00000362283 70 ntBASIC0.55□□□□□ -2.32
VPS28Q9UK41 MIR598-201ENST00000384868 97 ntBASIC0.55□□□□□ -2.32
VPS28Q9UK41 SNORD127-201ENST00000458892 86 ntBASIC0.55□□□□□ -2.32
VPS28Q9UK41 RNU7-45P-201ENST00000459460 63 ntBASIC0.55□□□□□ -2.32
VPS28Q9UK41 SNORD116-25-201ENST00000516517 92 ntBASIC0.55□□□□□ -2.32
VPS28Q9UK41 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.55□□□□□ -2.32
VPS28Q9UK41 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.54□□□□□ -2.32
VPS28Q9UK41 AL358176.2-201ENST00000425769 204 ntBASIC0.54□□□□□ -2.32
VPS28Q9UK41 RNU7-102P-201ENST00000458948 62 ntBASIC0.54□□□□□ -2.32
VPS28Q9UK41 RNU7-70P-201ENST00000516941 66 ntBASIC0.54□□□□□ -2.32
VPS28Q9UK41 RNU7-156P-201ENST00000517214 74 ntBASIC0.54□□□□□ -2.32
VPS28Q9UK41 MIR3152-201ENST00000579801 74 ntBASIC0.54□□□□□ -2.32
VPS28Q9UK41 AC090897.1-201ENST00000580909 226 ntBASIC0.54□□□□□ -2.32
VPS28Q9UK41 SNORD92-201ENST00000585078 85 ntBASIC0.54□□□□□ -2.32
VPS28Q9UK41 AL162730.1-201ENST00000605734 292 ntBASIC0.54□□□□□ -2.32
VPS28Q9UK41 MIR7111-201ENST00000619751 72 ntBASIC0.54□□□□□ -2.32
VPS28Q9UK41 AL596211.1-201ENST00000569873 2277 ntBASIC0.54□□□□□ -2.32
VPS28Q9UK41 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.54□□□□□ -2.32
VPS28Q9UK41 RNA5SP499-201ENST00000363982 119 ntBASIC0.53□□□□□ -2.32
VPS28Q9UK41 Y_RNA.430-201ENST00000384081 110 ntBASIC0.53□□□□□ -2.32
VPS28Q9UK41 SNORA20-201ENST00000384662 132 ntBASIC0.53□□□□□ -2.32
VPS28Q9UK41 Y_RNA.556-201ENST00000384677 113 ntBASIC0.53□□□□□ -2.32
VPS28Q9UK41 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.53□□□□□ -2.32
VPS28Q9UK41 AC098934.3-201ENST00000430450 190 ntBASIC0.53□□□□□ -2.32
VPS28Q9UK41 AC092628.1-201ENST00000436250 252 ntBASIC0.53□□□□□ -2.32
VPS28Q9UK41 RNU6-229P-201ENST00000516614 102 ntBASIC0.53□□□□□ -2.32
VPS28Q9UK41 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.53□□□□□ -2.33
VPS28Q9UK41 Y_RNA.308-201ENST00000365043 101 ntBASIC0.52□□□□□ -2.33
VPS28Q9UK41 RNU6-578P-201ENST00000390980 103 ntBASIC0.52□□□□□ -2.33
VPS28Q9UK41 SNORD100-201ENST00000408573 76 ntBASIC0.52□□□□□ -2.33
VPS28Q9UK41 RNA5SP237-201ENST00000410414 113 ntBASIC0.52□□□□□ -2.33
VPS28Q9UK41 SEPT7P4-201ENST00000437076 306 ntBASIC0.52□□□□□ -2.33
VPS28Q9UK41 RPL39P25-201ENST00000449384 154 ntBASIC0.52□□□□□ -2.33
VPS28Q9UK41 MIR378D2-201ENST00000580636 98 ntBASIC0.52□□□□□ -2.33
VPS28Q9UK41 AC008608.1-201ENST00000603910 127 ntBASIC0.52□□□□□ -2.33
VPS28Q9UK41 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.52□□□□□ -2.33
VPS28Q9UK41 Y_RNA.562-201ENST00000384695 113 ntBASIC0.51□□□□□ -2.33
VPS28Q9UK41 MIR1302-3-201ENST00000408128 138 ntBASIC0.51□□□□□ -2.33
VPS28Q9UK41 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.51□□□□□ -2.33
VPS28Q9UK41 AL157398.1-201ENST00000452981 186 ntBASIC0.51□□□□□ -2.33
VPS28Q9UK41 Y_RNA.121-201ENST00000363309 113 ntBASIC0.5□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 169.9 ms