Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 RNU6-111P-201ENST00000517179 105 ntBASIC0.83□□□□□ -2.28
NPHP3Q7Z494 MIR4308-201ENST00000580634 81 ntBASIC0.83□□□□□ -2.28
NPHP3Q7Z494 MIR4744-201ENST00000581563 82 ntBASIC0.83□□□□□ -2.28
NPHP3Q7Z494 MIR376A2-201ENST00000636782 80 ntBASIC0.83□□□□□ -2.28
NPHP3Q7Z494 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
NPHP3Q7Z494 MIR342-201ENST00000362212 99 ntBASIC0.82□□□□□ -2.28
NPHP3Q7Z494 Y_RNA.452-201ENST00000384202 108 ntBASIC0.82□□□□□ -2.28
NPHP3Q7Z494 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.82□□□□□ -2.28
NPHP3Q7Z494 AL121914.1-201ENST00000450188 156 ntBASIC0.82□□□□□ -2.28
NPHP3Q7Z494 RPS29P24-201ENST00000486345 171 ntBASIC0.82□□□□□ -2.28
NPHP3Q7Z494 MIR3129-201ENST00000581095 76 ntBASIC0.82□□□□□ -2.28
NPHP3Q7Z494 7SK.10-201ENST00000621414 298 ntBASIC0.82□□□□□ -2.28
NPHP3Q7Z494 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
NPHP3Q7Z494 Y_RNA.7-201ENST00000362352 102 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 RNU6-103P-201ENST00000363686 107 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 SNORA20.1-201ENST00000364790 130 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 RNU6-1335P-201ENST00000365426 107 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 RNU6-1189P-201ENST00000383958 107 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 RNU6-463P-201ENST00000384340 107 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 RNU6-578P-201ENST00000390980 103 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 SNORD89-201ENST00000390981 114 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 SNORD111-201ENST00000408139 94 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 AC244023.1-201ENST00000426884 112 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 FABP5P4-201ENST00000437203 171 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 snoU13.21-201ENST00000459368 105 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 RNU6-1023P-201ENST00000516137 106 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 RNA5SP255-201ENST00000516370 107 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.81□□□□□ -2.28
NPHP3Q7Z494 AC242498.1-201ENST00000604134 111 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 AL162730.1-201ENST00000605734 292 ntBASIC0.81□□□□□ -2.28
NPHP3Q7Z494 Y_RNA.440-201ENST00000384120 114 ntBASIC0.8□□□□□ -2.28
NPHP3Q7Z494 Y_RNA.478-201ENST00000384358 107 ntBASIC0.8□□□□□ -2.28
NPHP3Q7Z494 MIR605-201ENST00000385078 83 ntBASIC0.8□□□□□ -2.28
NPHP3Q7Z494 MTND5P15-201ENST00000434246 349 ntBASIC0.8□□□□□ -2.28
NPHP3Q7Z494 MIR8055-201ENST00000610739 97 ntBASIC0.8□□□□□ -2.28
NPHP3Q7Z494 MIR2909-201ENST00000617113 69 ntBASIC0.8□□□□□ -2.28
NPHP3Q7Z494 AC023934.1-201ENST00000574529 2389 ntBASIC0.79□□□□□ -2.28
NPHP3Q7Z494 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.79□□□□□ -2.28
NPHP3Q7Z494 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
NPHP3Q7Z494 Y_RNA.144-201ENST00000363521 113 ntBASIC0.79□□□□□ -2.28
NPHP3Q7Z494 Y_RNA.410-201ENST00000383992 113 ntBASIC0.79□□□□□ -2.28
NPHP3Q7Z494 SNORA79-201ENST00000408376 140 ntBASIC0.79□□□□□ -2.28
NPHP3Q7Z494 RNU6-994P-201ENST00000410507 111 ntBASIC0.79□□□□□ -2.28
NPHP3Q7Z494 RNU6-1190P-201ENST00000410811 104 ntBASIC0.79□□□□□ -2.28
NPHP3Q7Z494 AL035398.1-201ENST00000430869 322 ntBASIC0.79□□□□□ -2.28
NPHP3Q7Z494 RNU7-73P-201ENST00000458743 63 ntBASIC0.79□□□□□ -2.28
NPHP3Q7Z494 RNU2-11P-201ENST00000459191 187 ntBASIC0.79□□□□□ -2.28
NPHP3Q7Z494 RNA5SP395-201ENST00000516567 118 ntBASIC0.79□□□□□ -2.28
NPHP3Q7Z494 RNU6-229P-201ENST00000516614 102 ntBASIC0.79□□□□□ -2.28
NPHP3Q7Z494 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.79□□□□□ -2.28
NPHP3Q7Z494 Y_RNA.168-201ENST00000363740 102 ntBASIC0.78□□□□□ -2.28
NPHP3Q7Z494 Y_RNA.182-201ENST00000363880 111 ntBASIC0.78□□□□□ -2.28
NPHP3Q7Z494 Y_RNA.571-201ENST00000384753 98 ntBASIC0.78□□□□□ -2.28
NPHP3Q7Z494 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
NPHP3Q7Z494 RNU4-43P-201ENST00000410628 137 ntBASIC0.78□□□□□ -2.28
NPHP3Q7Z494 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.78□□□□□ -2.28
NPHP3Q7Z494 RNU6-998P-201ENST00000515894 101 ntBASIC0.78□□□□□ -2.28
NPHP3Q7Z494 Y_RNA.797-201ENST00000515977 94 ntBASIC0.78□□□□□ -2.28
NPHP3Q7Z494 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
NPHP3Q7Z494 MIR5087-201ENST00000635826 76 ntBASIC0.78□□□□□ -2.28
NPHP3Q7Z494 MIR100-201ENST00000385259 80 ntBASIC0.77□□□□□ -2.29
NPHP3Q7Z494 AC015818.7-201ENST00000428754 109 ntBASIC0.77□□□□□ -2.29
NPHP3Q7Z494 AC087499.7-201ENST00000441958 109 ntBASIC0.77□□□□□ -2.29
NPHP3Q7Z494 RNU7-45P-201ENST00000459460 63 ntBASIC0.77□□□□□ -2.29
NPHP3Q7Z494 RNU4-71P-201ENST00000516258 113 ntBASIC0.77□□□□□ -2.29
NPHP3Q7Z494 RNU7-53P-201ENST00000516705 60 ntBASIC0.77□□□□□ -2.29
NPHP3Q7Z494 AP000753.3-201ENST00000604083 169 ntBASIC0.77□□□□□ -2.29
NPHP3Q7Z494 RNU6-580P-201ENST00000365159 107 ntBASIC0.76□□□□□ -2.29
NPHP3Q7Z494 Y_RNA.351-201ENST00000365436 96 ntBASIC0.76□□□□□ -2.29
NPHP3Q7Z494 MT-TN-201ENST00000387400 73 ntBASIC0.76□□□□□ -2.29
NPHP3Q7Z494 AC006461.1-201ENST00000412637 326 ntBASIC0.76□□□□□ -2.29
NPHP3Q7Z494 RNU7-96P-201ENST00000459535 64 ntBASIC0.76□□□□□ -2.29
NPHP3Q7Z494 MIR378D2-201ENST00000580636 98 ntBASIC0.76□□□□□ -2.29
NPHP3Q7Z494 uc_338.6-201ENST00000613544 171 ntBASIC0.76□□□□□ -2.29
NPHP3Q7Z494 Z97988.1-201ENST00000637697 135 ntBASIC0.76□□□□□ -2.29
NPHP3Q7Z494 RNU6-978P-201ENST00000364371 103 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 RNU6-47P-201ENST00000383866 107 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 RNU4-70P-201ENST00000384579 139 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 SNORD38B-201ENST00000384690 67 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 MIR548I3-201ENST00000408378 149 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 RNU6-602P-201ENST00000411155 105 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 SNORD83.1-201ENST00000411362 77 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 RPS26P5-201ENST00000418544 335 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 AL606490.4-201ENST00000423117 127 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 SEPT7P4-201ENST00000437076 306 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 AC067940.1-201ENST00000458411 300 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 U7.7-201ENST00000459276 60 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 MIR4264-201ENST00000583520 66 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 MIR4653-201ENST00000585107 83 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 SNORD38B-202ENST00000625943 69 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 U6.106-201ENST00000636360 105 ntBASIC0.75□□□□□ -2.29
NPHP3Q7Z494 MIR377-201ENST00000362145 69 ntBASIC0.74□□□□□ -2.29
NPHP3Q7Z494 Y_RNA.121-201ENST00000363309 113 ntBASIC0.74□□□□□ -2.29
NPHP3Q7Z494 SNORA1.1-201ENST00000364671 133 ntBASIC0.74□□□□□ -2.29
NPHP3Q7Z494 Y_RNA.542-201ENST00000384641 111 ntBASIC0.74□□□□□ -2.29
NPHP3Q7Z494 RNU6-918P-201ENST00000391219 106 ntBASIC0.74□□□□□ -2.29
NPHP3Q7Z494 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.74□□□□□ -2.29
NPHP3Q7Z494 SNORD116-25-201ENST00000516517 92 ntBASIC0.74□□□□□ -2.29
NPHP3Q7Z494 AC004817.2-201ENST00000561794 651 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms