Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNU7-45P-201ENST00000459460 63 ntBASIC-1.28□□□□□ -2.61
USP54Q70EL1 RN7SKP298-201ENST00000515950 94 ntBASIC-1.28□□□□□ -2.61
USP54Q70EL1 MIR3920-201ENST00000581751 86 ntBASIC-1.28□□□□□ -2.61
USP54Q70EL1 AC005014.2-201ENST00000607795 599 ntBASIC-1.28□□□□□ -2.61
USP54Q70EL1 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 RNU4-80P-201ENST00000363200 141 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 RNU6-99P-201ENST00000364721 107 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 SNORA18-201ENST00000384416 132 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 AL365203.2-201ENST00000423444 196 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 AC021146.9-201ENST00000512503 156 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 AC009094.1-201ENST00000564443 426 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 YWHAEP2-201ENST00000580066 112 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 AL049861.1-201ENST00000603130 150 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 RNU6-1062P-201ENST00000383908 107 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 SNORA20-201ENST00000384662 132 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 MTND1P2-201ENST00000430604 821 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 SNORD38.3-201ENST00000516599 73 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 MTND3P12-201ENST00000559068 328 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 MIR6851-201ENST00000617060 67 ntBASIC-1.29□□□□□ -2.62
USP54Q70EL1 Y_RNA.119-201ENST00000363301 96 ntBASIC-1.3□□□□□ -2.62
USP54Q70EL1 MT-TY-201ENST00000387409 66 ntBASIC-1.3□□□□□ -2.62
USP54Q70EL1 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.3□□□□□ -2.62
USP54Q70EL1 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC-1.3□□□□□ -2.62
USP54Q70EL1 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.3□□□□□ -2.62
USP54Q70EL1 Y_RNA.637-201ENST00000459424 114 ntBASIC-1.3□□□□□ -2.62
USP54Q70EL1 Y_RNA.682-201ENST00000516457 100 ntBASIC-1.3□□□□□ -2.62
USP54Q70EL1 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.3□□□□□ -2.62
USP54Q70EL1 RNU6-158P-201ENST00000517104 100 ntBASIC-1.3□□□□□ -2.62
USP54Q70EL1 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC-1.3□□□□□ -2.62
USP54Q70EL1 MIR1244-1-201ENST00000612829 85 ntBASIC-1.3□□□□□ -2.62
USP54Q70EL1 MIR1244-3-201ENST00000635744 85 ntBASIC-1.3□□□□□ -2.62
USP54Q70EL1 MIR1244-2-201ENST00000636449 85 ntBASIC-1.3□□□□□ -2.62
USP54Q70EL1 MIR1244-4-202ENST00000636813 85 ntBASIC-1.3□□□□□ -2.62
USP54Q70EL1 RNY4P6-201ENST00000363667 96 ntBASIC-1.31□□□□□ -2.62
USP54Q70EL1 SNORD74.6-201ENST00000364796 70 ntBASIC-1.31□□□□□ -2.62
USP54Q70EL1 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-1.31□□□□□ -2.62
USP54Q70EL1 RNU2-14P-201ENST00000411053 191 ntBASIC-1.31□□□□□ -2.62
USP54Q70EL1 TRAJ51-201ENST00000504127 63 ntBASIC-1.31□□□□□ -2.62
USP54Q70EL1 AP000676.1-201ENST00000533307 52 ntBASIC-1.31□□□□□ -2.62
USP54Q70EL1 MIR3662-201ENST00000637030 95 ntBASIC-1.31□□□□□ -2.62
USP54Q70EL1 MTND5P18-201ENST00000445624 1801 ntBASIC-1.31□□□□□ -2.62
USP54Q70EL1 Y_RNA.331-201ENST00000365267 102 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 SNORA72.4-201ENST00000384174 132 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 AL590004.1-201ENST00000405321 300 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 AL445567.1-201ENST00000439121 144 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 RN7SKP295-201ENST00000517264 153 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 AC144568.1-201ENST00000520139 137 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 MIR3179-1-201ENST00000578940 84 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 MIR3179-2-201ENST00000579107 84 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 MIR3179-3-201ENST00000579566 84 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 MIR3179-4-201ENST00000617599 84 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 RNU6-888P-201ENST00000363010 101 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 RNU6-383P-201ENST00000410864 94 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 AL445193.1-201ENST00000441183 141 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC-1.32□□□□□ -2.62
USP54Q70EL1 MIR4659A-201ENST00000580269 81 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 MIR4473-201ENST00000583731 91 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 MIR3942-201ENST00000585264 109 ntBASIC-1.32□□□□□ -2.62
USP54Q70EL1 Y_RNA.27-201ENST00000362540 103 ntBASIC-1.33□□□□□ -2.62
USP54Q70EL1 RNU6-899P-201ENST00000363947 107 ntBASIC-1.33□□□□□ -2.62
USP54Q70EL1 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.33□□□□□ -2.62
USP54Q70EL1 RNU6-721P-201ENST00000410155 105 ntBASIC-1.33□□□□□ -2.62
USP54Q70EL1 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC-1.33□□□□□ -2.62
USP54Q70EL1 RNU6-864P-201ENST00000516256 108 ntBASIC-1.33□□□□□ -2.62
USP54Q70EL1 AL512360.1-201ENST00000555346 234 ntBASIC-1.33□□□□□ -2.62
USP54Q70EL1 MIR4500-201ENST00000579472 76 ntBASIC-1.33□□□□□ -2.62
USP54Q70EL1 AC005357.1-201ENST00000588399 301 ntBASIC-1.33□□□□□ -2.62
USP54Q70EL1 AC011603.4-201ENST00000611325 277 ntBASIC-1.33□□□□□ -2.62
USP54Q70EL1 AC099654.14-201ENST00000638599 341 ntBASIC-1.33□□□□□ -2.62
USP54Q70EL1 Y_RNA.14-201ENST00000362415 103 ntBASIC-1.34□□□□□ -2.62
USP54Q70EL1 Y_RNA.77-201ENST00000362962 107 ntBASIC-1.34□□□□□ -2.62
USP54Q70EL1 Y_RNA.383-201ENST00000383855 97 ntBASIC-1.34□□□□□ -2.62
USP54Q70EL1 Y_RNA.440-201ENST00000384120 114 ntBASIC-1.34□□□□□ -2.62
USP54Q70EL1 Y_RNA.559-201ENST00000384686 107 ntBASIC-1.34□□□□□ -2.62
USP54Q70EL1 MIR599-201ENST00000385069 95 ntBASIC-1.34□□□□□ -2.62
USP54Q70EL1 SNORD78.2-201ENST00000391076 69 ntBASIC-1.34□□□□□ -2.62
USP54Q70EL1 RNU6-1050P-201ENST00000410388 107 ntBASIC-1.34□□□□□ -2.62
USP54Q70EL1 AF228730.3-201ENST00000436691 102 ntBASIC-1.34□□□□□ -2.62
USP54Q70EL1 SNORD77.4-201ENST00000516158 81 ntBASIC-1.34□□□□□ -2.62
USP54Q70EL1 RNU7-35P-201ENST00000517174 62 ntBASIC-1.34□□□□□ -2.62
USP54Q70EL1 AP003733.2-201ENST00000529409 171 ntBASIC-1.34□□□□□ -2.62
USP54Q70EL1 Y_RNA.121-201ENST00000363309 113 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 RNU6-483P-201ENST00000384088 108 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 SNORD56B-201ENST00000384713 71 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 Y_RNA.577-201ENST00000384794 101 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 MIR617-201ENST00000385030 97 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.35□□□□□ -2.63
USP54Q70EL1 RNU2-31P-201ENST00000516954 155 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 RNU6-1270P-201ENST00000517128 108 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.35□□□□□ -2.63
USP54Q70EL1 U6.109-201ENST00000636749 87 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 Y_RNA.66-201ENST00000362862 102 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 SNORD81.1-201ENST00000363064 77 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 Y_RNA.301-201ENST00000364990 103 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 Y_RNA.454-201ENST00000384224 113 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 SNORD2-201ENST00000459163 69 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 RNA5SP180-201ENST00000516181 101 ntBASIC-1.35□□□□□ -2.63
USP54Q70EL1 RNU6-911P-201ENST00000516523 104 ntBASIC-1.35□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 176.1 ms