Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL596211.1-201ENST00000569873 2277 ntBASIC1.04□□□□□ -2.24
USP41Q3LFD5 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
USP41Q3LFD5 RNU6-205P-201ENST00000390858 107 ntBASIC1.03□□□□□ -2.24
USP41Q3LFD5 RNU6-613P-201ENST00000410412 108 ntBASIC1.03□□□□□ -2.24
USP41Q3LFD5 RNU7-80P-201ENST00000459562 61 ntBASIC1.03□□□□□ -2.24
USP41Q3LFD5 Y_RNA.700-201ENST00000516806 100 ntBASIC1.03□□□□□ -2.24
USP41Q3LFD5 AC036111.3-201ENST00000526389 112 ntBASIC1.03□□□□□ -2.24
USP41Q3LFD5 HSPE1P19-201ENST00000603327 295 ntBASIC1.03□□□□□ -2.24
USP41Q3LFD5 AP000753.3-201ENST00000604083 169 ntBASIC1.03□□□□□ -2.24
USP41Q3LFD5 AL020996.3-201ENST00000606617 222 ntBASIC1.03□□□□□ -2.24
USP41Q3LFD5 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.03□□□□□ -2.24
USP41Q3LFD5 SNORA1.1-201ENST00000364671 133 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 Y_RNA.337-201ENST00000365312 102 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 Y_RNA.354-201ENST00000365448 111 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 Y_RNA.393-201ENST00000383936 102 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 Y_RNA.454-201ENST00000384224 113 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 RNU6-125P-201ENST00000384505 107 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 RNU6-768P-201ENST00000384683 107 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 MIR624-201ENST00000385217 97 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 RNU6-1190P-201ENST00000410811 104 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 RNU7-120P-201ENST00000459334 63 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 RNU7-45P-201ENST00000459460 63 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 AL391516.1-201ENST00000554380 2449 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 AC004792.1-201ENST00000614523 137 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 AC012676.2-201ENST00000619258 186 ntBASIC1.02□□□□□ -2.25
USP41Q3LFD5 SNORD113.3-201ENST00000364630 78 ntBASIC1.01□□□□□ -2.25
USP41Q3LFD5 RNU6-1318P-201ENST00000365389 103 ntBASIC1.01□□□□□ -2.25
USP41Q3LFD5 SNORD38B-201ENST00000384690 67 ntBASIC1.01□□□□□ -2.25
USP41Q3LFD5 MIR942-201ENST00000401111 86 ntBASIC1.01□□□□□ -2.25
USP41Q3LFD5 Y_RNA.662-201ENST00000516028 97 ntBASIC1.01□□□□□ -2.25
USP41Q3LFD5 RNU6-1149P-201ENST00000516810 97 ntBASIC1.01□□□□□ -2.25
USP41Q3LFD5 RNU6-94P-201ENST00000607728 107 ntBASIC1.01□□□□□ -2.25
USP41Q3LFD5 MIR8055-201ENST00000610739 97 ntBASIC1.01□□□□□ -2.25
USP41Q3LFD5 AC106800.4-201ENST00000614905 153 ntBASIC1.01□□□□□ -2.25
USP41Q3LFD5 MIR6515-201ENST00000619843 57 ntBASIC1.01□□□□□ -2.25
USP41Q3LFD5 AC091932.4-201ENST00000623386 200 ntBASIC1.01□□□□□ -2.25
USP41Q3LFD5 SNORD38B-202ENST00000625943 69 ntBASIC1.01□□□□□ -2.25
USP41Q3LFD5 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
USP41Q3LFD5 RNU6-682P-201ENST00000363843 106 ntBASIC1□□□□□ -2.25
USP41Q3LFD5 Y_RNA.240-201ENST00000364469 95 ntBASIC1□□□□□ -2.25
USP41Q3LFD5 RNU6-597P-201ENST00000365620 102 ntBASIC1□□□□□ -2.25
USP41Q3LFD5 Y_RNA.785-201ENST00000384290 109 ntBASIC1□□□□□ -2.25
USP41Q3LFD5 MIR200A-201ENST00000384875 90 ntBASIC1□□□□□ -2.25
USP41Q3LFD5 RNU6-994P-201ENST00000410507 111 ntBASIC1□□□□□ -2.25
USP41Q3LFD5 MIR3973-201ENST00000579824 107 ntBASIC1□□□□□ -2.25
USP41Q3LFD5 RNU1-133P-201ENST00000364867 167 ntBASIC0.99□□□□□ -2.25
USP41Q3LFD5 SNORD114-24-201ENST00000365029 72 ntBASIC0.99□□□□□ -2.25
USP41Q3LFD5 RNU6-239P-201ENST00000390990 99 ntBASIC0.99□□□□□ -2.25
USP41Q3LFD5 SNORD111-201ENST00000408139 94 ntBASIC0.99□□□□□ -2.25
USP41Q3LFD5 RNU5E-9P-201ENST00000411164 104 ntBASIC0.99□□□□□ -2.25
USP41Q3LFD5 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.99□□□□□ -2.25
USP41Q3LFD5 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.99□□□□□ -2.25
USP41Q3LFD5 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.99□□□□□ -2.25
USP41Q3LFD5 MIR4264-201ENST00000583520 66 ntBASIC0.99□□□□□ -2.25
USP41Q3LFD5 Z97988.1-201ENST00000637697 135 ntBASIC0.99□□□□□ -2.25
USP41Q3LFD5 MTND5P32-201ENST00000560711 1802 ntBASIC0.99□□□□□ -2.25
USP41Q3LFD5 RNU6-1082P-201ENST00000364574 107 ntBASIC0.98□□□□□ -2.25
USP41Q3LFD5 MT-TN-201ENST00000387400 73 ntBASIC0.98□□□□□ -2.25
USP41Q3LFD5 AC244023.1-201ENST00000426884 112 ntBASIC0.98□□□□□ -2.25
USP41Q3LFD5 AC067940.1-201ENST00000458411 300 ntBASIC0.98□□□□□ -2.25
USP41Q3LFD5 UBL5P1-201ENST00000507979 193 ntBASIC0.98□□□□□ -2.25
USP41Q3LFD5 RNU6-182P-201ENST00000516970 105 ntBASIC0.98□□□□□ -2.25
USP41Q3LFD5 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.98□□□□□ -2.25
USP41Q3LFD5 AC242498.1-201ENST00000604134 111 ntBASIC0.98□□□□□ -2.25
USP41Q3LFD5 MIR6844-201ENST00000637122 62 ntBASIC0.98□□□□□ -2.25
USP41Q3LFD5 Y_RNA.168-201ENST00000363740 102 ntBASIC0.97□□□□□ -2.25
USP41Q3LFD5 RNU4-84P-201ENST00000364200 139 ntBASIC0.97□□□□□ -2.25
USP41Q3LFD5 SNORD37.2-201ENST00000391075 66 ntBASIC0.97□□□□□ -2.25
USP41Q3LFD5 RNU6-602P-201ENST00000411155 105 ntBASIC0.97□□□□□ -2.25
USP41Q3LFD5 SCARNA15-202ENST00000516881 127 ntBASIC0.97□□□□□ -2.25
USP41Q3LFD5 CYP3A137P-201ENST00000562436 69 ntBASIC0.97□□□□□ -2.25
USP41Q3LFD5 MIR4661-201ENST00000582720 75 ntBASIC0.97□□□□□ -2.25
USP41Q3LFD5 MIR6717-201ENST00000622747 73 ntBASIC0.97□□□□□ -2.25
USP41Q3LFD5 RNU6-818P-201ENST00000364837 108 ntBASIC0.96□□□□□ -2.26
USP41Q3LFD5 SNORA75.5-201ENST00000391291 81 ntBASIC0.96□□□□□ -2.26
USP41Q3LFD5 RNA5SP261-201ENST00000410536 106 ntBASIC0.96□□□□□ -2.26
USP41Q3LFD5 RPS3AP1-201ENST00000413190 320 ntBASIC0.96□□□□□ -2.26
USP41Q3LFD5 FABP5P4-201ENST00000437203 171 ntBASIC0.96□□□□□ -2.26
USP41Q3LFD5 RNU7-62P-201ENST00000458856 62 ntBASIC0.96□□□□□ -2.26
USP41Q3LFD5 PDCD5P2-201ENST00000507570 312 ntBASIC0.96□□□□□ -2.26
USP41Q3LFD5 AC074198.2-201ENST00000508153 258 ntBASIC0.96□□□□□ -2.26
USP41Q3LFD5 MIR3658-201ENST00000636291 56 ntBASIC0.96□□□□□ -2.26
USP41Q3LFD5 MIR377-201ENST00000362145 69 ntBASIC0.95□□□□□ -2.26
USP41Q3LFD5 Y_RNA.52-201ENST00000362760 96 ntBASIC0.95□□□□□ -2.26
USP41Q3LFD5 SNORD89-201ENST00000390981 114 ntBASIC0.95□□□□□ -2.26
USP41Q3LFD5 RNU6-588P-201ENST00000410281 105 ntBASIC0.95□□□□□ -2.26
USP41Q3LFD5 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.95□□□□□ -2.26
USP41Q3LFD5 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.95□□□□□ -2.26
USP41Q3LFD5 RNU6-1187P-201ENST00000364771 110 ntBASIC0.94□□□□□ -2.26
USP41Q3LFD5 Y_RNA.466-201ENST00000384294 113 ntBASIC0.94□□□□□ -2.26
USP41Q3LFD5 SNORA20-201ENST00000384662 132 ntBASIC0.94□□□□□ -2.26
USP41Q3LFD5 MIR613-201ENST00000385248 95 ntBASIC0.94□□□□□ -2.26
USP41Q3LFD5 SNORA26.6-201ENST00000391256 115 ntBASIC0.94□□□□□ -2.26
USP41Q3LFD5 MIR5000-201ENST00000577717 103 ntBASIC0.94□□□□□ -2.26
USP41Q3LFD5 MIR4698-201ENST00000577795 80 ntBASIC0.94□□□□□ -2.26
USP41Q3LFD5 MIR3152-201ENST00000579801 74 ntBASIC0.94□□□□□ -2.26
USP41Q3LFD5 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.94□□□□□ -2.26
USP41Q3LFD5 RNU4-16P-201ENST00000364737 141 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 RNU6-580P-201ENST00000365159 107 ntBASIC0.93□□□□□ -2.26
USP41Q3LFD5 MIR588-201ENST00000384900 83 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 165.1 ms