Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MIR377-201ENST00000362145 69 ntBASIC1.07□□□□□ -2.24
COL28A1Q2UY09 Y_RNA.257-201ENST00000364596 102 ntBASIC1.07□□□□□ -2.24
COL28A1Q2UY09 RNU6-597P-201ENST00000365620 102 ntBASIC1.07□□□□□ -2.24
COL28A1Q2UY09 MRPL35P3-201ENST00000421557 364 ntBASIC1.07□□□□□ -2.24
COL28A1Q2UY09 MIR3129-201ENST00000581095 76 ntBASIC1.07□□□□□ -2.24
COL28A1Q2UY09 MIR6516-201ENST00000630554 81 ntBASIC1.07□□□□□ -2.24
COL28A1Q2UY09 MIR924-201ENST00000638017 53 ntBASIC1.07□□□□□ -2.24
COL28A1Q2UY09 AL391516.1-201ENST00000554380 2449 ntBASIC1.06□□□□□ -2.24
COL28A1Q2UY09 Y_RNA.785-201ENST00000384290 109 ntBASIC1.06□□□□□ -2.24
COL28A1Q2UY09 MIR624-201ENST00000385217 97 ntBASIC1.06□□□□□ -2.24
COL28A1Q2UY09 RPS29P28-201ENST00000446439 141 ntBASIC1.06□□□□□ -2.24
COL28A1Q2UY09 RNU6-958P-201ENST00000516995 106 ntBASIC1.06□□□□□ -2.24
COL28A1Q2UY09 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.06□□□□□ -2.24
COL28A1Q2UY09 RNA5SP127-201ENST00000411051 133 ntBASIC1.05□□□□□ -2.24
COL28A1Q2UY09 RNU7-120P-201ENST00000459334 63 ntBASIC1.05□□□□□ -2.24
COL28A1Q2UY09 RNU7-80P-201ENST00000459562 61 ntBASIC1.05□□□□□ -2.24
COL28A1Q2UY09 RNU6-138P-201ENST00000515952 107 ntBASIC1.05□□□□□ -2.24
COL28A1Q2UY09 AC036111.3-201ENST00000526389 112 ntBASIC1.05□□□□□ -2.24
COL28A1Q2UY09 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.05□□□□□ -2.24
COL28A1Q2UY09 MIR8055-201ENST00000610739 97 ntBASIC1.05□□□□□ -2.24
COL28A1Q2UY09 MIR376A2-201ENST00000636782 80 ntBASIC1.05□□□□□ -2.24
COL28A1Q2UY09 Z97988.1-201ENST00000637697 135 ntBASIC1.05□□□□□ -2.24
COL28A1Q2UY09 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
COL28A1Q2UY09 Y_RNA.330-201ENST00000365230 109 ntBASIC1.04□□□□□ -2.24
COL28A1Q2UY09 SNORA22-201ENST00000383907 134 ntBASIC1.04□□□□□ -2.24
COL28A1Q2UY09 Y_RNA.454-201ENST00000384224 113 ntBASIC1.04□□□□□ -2.24
COL28A1Q2UY09 SNORA22C-201ENST00000384614 134 ntBASIC1.04□□□□□ -2.24
COL28A1Q2UY09 SNORD111-201ENST00000408139 94 ntBASIC1.04□□□□□ -2.24
COL28A1Q2UY09 Y_RNA.793-201ENST00000411222 111 ntBASIC1.04□□□□□ -2.24
COL28A1Q2UY09 RNU6-1219P-201ENST00000516143 112 ntBASIC1.04□□□□□ -2.24
COL28A1Q2UY09 RNA5SP121-201ENST00000516537 101 ntBASIC1.04□□□□□ -2.24
COL28A1Q2UY09 AC131055.1-201ENST00000584626 316 ntBASIC1.04□□□□□ -2.24
COL28A1Q2UY09 HSPE1P19-201ENST00000603327 295 ntBASIC1.04□□□□□ -2.24
COL28A1Q2UY09 AC106800.4-201ENST00000614905 153 ntBASIC1.04□□□□□ -2.24
COL28A1Q2UY09 Y_RNA.29-201ENST00000362570 113 ntBASIC1.03□□□□□ -2.24
COL28A1Q2UY09 Y_RNA.168-201ENST00000363740 102 ntBASIC1.03□□□□□ -2.24
COL28A1Q2UY09 SNORA25.7-201ENST00000364375 127 ntBASIC1.03□□□□□ -2.24
COL28A1Q2UY09 Y_RNA.258-201ENST00000364613 105 ntBASIC1.03□□□□□ -2.24
COL28A1Q2UY09 SNORD113.3-201ENST00000364630 78 ntBASIC1.03□□□□□ -2.24
COL28A1Q2UY09 SNORD114-24-201ENST00000365029 72 ntBASIC1.03□□□□□ -2.24
COL28A1Q2UY09 RNU6-580P-201ENST00000365159 107 ntBASIC1.03□□□□□ -2.24
COL28A1Q2UY09 RNU6-913P-201ENST00000390913 95 ntBASIC1.03□□□□□ -2.24
COL28A1Q2UY09 AC006461.1-201ENST00000412637 326 ntBASIC1.03□□□□□ -2.24
COL28A1Q2UY09 RNU2-11P-201ENST00000459191 187 ntBASIC1.03□□□□□ -2.24
COL28A1Q2UY09 AC107027.2-201ENST00000512197 115 ntBASIC1.03□□□□□ -2.24
COL28A1Q2UY09 AP002392.1-201ENST00000537692 208 ntBASIC1.03□□□□□ -2.24
COL28A1Q2UY09 MIR4264-201ENST00000583520 66 ntBASIC1.03□□□□□ -2.24
COL28A1Q2UY09 RNU6-654P-201ENST00000364373 107 ntBASIC1.02□□□□□ -2.25
COL28A1Q2UY09 MIR548I3-201ENST00000408378 149 ntBASIC1.02□□□□□ -2.25
COL28A1Q2UY09 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
COL28A1Q2UY09 AC012676.2-201ENST00000619258 186 ntBASIC1.02□□□□□ -2.25
COL28A1Q2UY09 SNORD114-23-201ENST00000363536 72 ntBASIC1.01□□□□□ -2.25
COL28A1Q2UY09 Y_RNA.240-201ENST00000364469 95 ntBASIC1.01□□□□□ -2.25
COL28A1Q2UY09 Y_RNA.351-201ENST00000365436 96 ntBASIC1.01□□□□□ -2.25
COL28A1Q2UY09 RNU6-125P-201ENST00000384505 107 ntBASIC1.01□□□□□ -2.25
COL28A1Q2UY09 FABP5P4-201ENST00000437203 171 ntBASIC1.01□□□□□ -2.25
COL28A1Q2UY09 SNORD124-201ENST00000459577 104 ntBASIC1.01□□□□□ -2.25
COL28A1Q2UY09 OR2A41P-201ENST00000473586 105 ntBASIC1.01□□□□□ -2.25
COL28A1Q2UY09 AC022559.1-201ENST00000520905 205 ntBASIC1.01□□□□□ -2.25
COL28A1Q2UY09 AP000753.3-201ENST00000604083 169 ntBASIC1.01□□□□□ -2.25
COL28A1Q2UY09 AC103810.9-201ENST00000606688 112 ntBASIC1.01□□□□□ -2.25
COL28A1Q2UY09 Y_RNA.337-201ENST00000365312 102 ntBASIC1□□□□□ -2.25
COL28A1Q2UY09 RNU6-716P-201ENST00000365621 103 ntBASIC1□□□□□ -2.25
COL28A1Q2UY09 RNA5SP261-201ENST00000410536 106 ntBASIC1□□□□□ -2.25
COL28A1Q2UY09 SCARNA15-202ENST00000516881 127 ntBASIC1□□□□□ -2.25
COL28A1Q2UY09 SNORA81.3-201ENST00000517283 198 ntBASIC1□□□□□ -2.25
COL28A1Q2UY09 MIR3973-201ENST00000579824 107 ntBASIC1□□□□□ -2.25
COL28A1Q2UY09 MIR4714-201ENST00000580728 77 ntBASIC1□□□□□ -2.25
COL28A1Q2UY09 AC010487.4-201ENST00000637027 61 ntBASIC1□□□□□ -2.25
COL28A1Q2UY09 SNORA1.1-201ENST00000364671 133 ntBASIC0.99□□□□□ -2.25
COL28A1Q2UY09 RNU6-35P-201ENST00000384530 107 ntBASIC0.99□□□□□ -2.25
COL28A1Q2UY09 Y_RNA.521-201ENST00000384560 114 ntBASIC0.99□□□□□ -2.25
COL28A1Q2UY09 SNORD38B-201ENST00000384690 67 ntBASIC0.99□□□□□ -2.25
COL28A1Q2UY09 AC090844.1-201ENST00000422019 156 ntBASIC0.99□□□□□ -2.25
COL28A1Q2UY09 SEPT7P4-201ENST00000437076 306 ntBASIC0.99□□□□□ -2.25
COL28A1Q2UY09 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.99□□□□□ -2.25
COL28A1Q2UY09 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.99□□□□□ -2.25
COL28A1Q2UY09 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.99□□□□□ -2.25
COL28A1Q2UY09 AC023827.1-201ENST00000569247 97 ntBASIC0.99□□□□□ -2.25
COL28A1Q2UY09 AC091932.4-201ENST00000623386 200 ntBASIC0.99□□□□□ -2.25
COL28A1Q2UY09 SNORD38B-202ENST00000625943 69 ntBASIC0.99□□□□□ -2.25
COL28A1Q2UY09 MIR302B-201ENST00000362188 73 ntBASIC0.98□□□□□ -2.25
COL28A1Q2UY09 RNU4-84P-201ENST00000364200 139 ntBASIC0.98□□□□□ -2.25
COL28A1Q2UY09 Y_RNA.357-201ENST00000365487 109 ntBASIC0.98□□□□□ -2.25
COL28A1Q2UY09 RNU6-239P-201ENST00000390990 99 ntBASIC0.98□□□□□ -2.25
COL28A1Q2UY09 RNU7-121P-201ENST00000516604 62 ntBASIC0.98□□□□□ -2.25
COL28A1Q2UY09 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.98□□□□□ -2.25
COL28A1Q2UY09 MIR3646-201ENST00000578301 84 ntBASIC0.98□□□□□ -2.25
COL28A1Q2UY09 MIR4661-201ENST00000582720 75 ntBASIC0.98□□□□□ -2.25
COL28A1Q2UY09 MIR8087-201ENST00000612745 78 ntBASIC0.98□□□□□ -2.25
COL28A1Q2UY09 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.98□□□□□ -2.25
COL28A1Q2UY09 RNU6-682P-201ENST00000363843 106 ntBASIC0.97□□□□□ -2.25
COL28A1Q2UY09 Y_RNA.430-201ENST00000384081 110 ntBASIC0.97□□□□□ -2.25
COL28A1Q2UY09 Y_RNA.441-201ENST00000384123 112 ntBASIC0.97□□□□□ -2.25
COL28A1Q2UY09 SNORA2B-201ENST00000384583 137 ntBASIC0.97□□□□□ -2.25
COL28A1Q2UY09 RNU6-768P-201ENST00000384683 107 ntBASIC0.97□□□□□ -2.25
COL28A1Q2UY09 SNORA26.6-201ENST00000391256 115 ntBASIC0.97□□□□□ -2.25
COL28A1Q2UY09 AC244023.1-201ENST00000426884 112 ntBASIC0.97□□□□□ -2.25
COL28A1Q2UY09 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.97□□□□□ -2.25
COL28A1Q2UY09 UBL5P1-201ENST00000507979 193 ntBASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 213.9 ms