Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 RNU6-275P-201ENST00000364910 107 ntBASIC0.69□□□□□ -2.3
PEX3P56589 MIR563-201ENST00000385080 79 ntBASIC0.69□□□□□ -2.3
PEX3P56589 MIR100-201ENST00000385259 80 ntBASIC0.69□□□□□ -2.3
PEX3P56589 PSMC1P5-201ENST00000512850 177 ntBASIC0.69□□□□□ -2.3
PEX3P56589 AC004817.2-201ENST00000561794 651 ntBASIC0.69□□□□□ -2.3
PEX3P56589 AC009779.6-201ENST00000603972 165 ntBASIC0.69□□□□□ -2.3
PEX3P56589 AP000753.3-201ENST00000604083 169 ntBASIC0.69□□□□□ -2.3
PEX3P56589 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.68□□□□□ -2.3
PEX3P56589 Y_RNA.75-201ENST00000362927 97 ntBASIC0.68□□□□□ -2.3
PEX3P56589 Y_RNA.412-201ENST00000384001 104 ntBASIC0.68□□□□□ -2.3
PEX3P56589 RNU6-643P-201ENST00000384018 107 ntBASIC0.68□□□□□ -2.3
PEX3P56589 SNORD89-201ENST00000390981 114 ntBASIC0.68□□□□□ -2.3
PEX3P56589 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.68□□□□□ -2.3
PEX3P56589 AL121914.1-201ENST00000450188 156 ntBASIC0.68□□□□□ -2.3
PEX3P56589 AL138752.1-201ENST00000452964 351 ntBASIC0.68□□□□□ -2.3
PEX3P56589 SCARNA15-202ENST00000516881 127 ntBASIC0.68□□□□□ -2.3
PEX3P56589 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.68□□□□□ -2.3
PEX3P56589 MIR378D2-201ENST00000580636 98 ntBASIC0.68□□□□□ -2.3
PEX3P56589 AC023934.1-201ENST00000574529 2389 ntBASIC0.68□□□□□ -2.3
PEX3P56589 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
PEX3P56589 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
PEX3P56589 MIR411-201ENST00000362239 96 ntBASIC0.67□□□□□ -2.3
PEX3P56589 RNU6-42P-201ENST00000384165 107 ntBASIC0.67□□□□□ -2.3
PEX3P56589 SNORA79-201ENST00000408376 140 ntBASIC0.67□□□□□ -2.3
PEX3P56589 RNU6-994P-201ENST00000410507 111 ntBASIC0.67□□□□□ -2.3
PEX3P56589 RNU7-62P-201ENST00000458856 62 ntBASIC0.67□□□□□ -2.3
PEX3P56589 MRPS18CP4-201ENST00000535821 231 ntBASIC0.67□□□□□ -2.3
PEX3P56589 AC091932.4-201ENST00000623386 200 ntBASIC0.67□□□□□ -2.3
PEX3P56589 SNORA1.1-201ENST00000364671 133 ntBASIC0.66□□□□□ -2.3
PEX3P56589 SNORA20.1-201ENST00000364790 130 ntBASIC0.66□□□□□ -2.3
PEX3P56589 SNORD38B-201ENST00000384690 67 ntBASIC0.66□□□□□ -2.3
PEX3P56589 MIR624-201ENST00000385217 97 ntBASIC0.66□□□□□ -2.3
PEX3P56589 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.66□□□□□ -2.3
PEX3P56589 Y_RNA.618-201ENST00000410949 107 ntBASIC0.66□□□□□ -2.3
PEX3P56589 RPS26P5-201ENST00000418544 335 ntBASIC0.66□□□□□ -2.3
PEX3P56589 snoU13.2-201ENST00000459201 104 ntBASIC0.66□□□□□ -2.3
PEX3P56589 SNORD116-25-201ENST00000516517 92 ntBASIC0.66□□□□□ -2.3
PEX3P56589 AC025627.3-201ENST00000582078 182 ntBASIC0.66□□□□□ -2.3
PEX3P56589 AC022709.1-201ENST00000615967 87 ntBASIC0.66□□□□□ -2.3
PEX3P56589 MIR6717-201ENST00000622747 73 ntBASIC0.66□□□□□ -2.3
PEX3P56589 SNORD38B-202ENST00000625943 69 ntBASIC0.66□□□□□ -2.3
PEX3P56589 U6.106-201ENST00000636360 105 ntBASIC0.66□□□□□ -2.3
PEX3P56589 MIR6841-201ENST00000637129 72 ntBASIC0.66□□□□□ -2.3
PEX3P56589 Y_RNA.182-201ENST00000363880 111 ntBASIC0.65□□□□□ -2.31
PEX3P56589 Y_RNA.200-201ENST00000364018 102 ntBASIC0.65□□□□□ -2.31
PEX3P56589 Y_RNA.430-201ENST00000384081 110 ntBASIC0.65□□□□□ -2.31
PEX3P56589 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.65□□□□□ -2.31
PEX3P56589 SNORD99-201ENST00000408612 74 ntBASIC0.65□□□□□ -2.31
PEX3P56589 RNU6-733P-201ENST00000410759 104 ntBASIC0.65□□□□□ -2.31
PEX3P56589 AC244098.3-201ENST00000424803 96 ntBASIC0.65□□□□□ -2.31
PEX3P56589 AC067940.1-201ENST00000458411 300 ntBASIC0.65□□□□□ -2.31
PEX3P56589 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.65□□□□□ -2.31
PEX3P56589 Y_RNA.797-201ENST00000515977 94 ntBASIC0.65□□□□□ -2.31
PEX3P56589 Y_RNA.355-201ENST00000365462 98 ntBASIC0.64□□□□□ -2.31
PEX3P56589 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
PEX3P56589 RNU6-47P-201ENST00000383866 107 ntBASIC0.64□□□□□ -2.31
PEX3P56589 RNU4-70P-201ENST00000384579 139 ntBASIC0.64□□□□□ -2.31
PEX3P56589 SNORD105-201ENST00000386910 85 ntBASIC0.64□□□□□ -2.31
PEX3P56589 SNORD83.1-201ENST00000411362 77 ntBASIC0.64□□□□□ -2.31
PEX3P56589 RNU7-45P-201ENST00000459460 63 ntBASIC0.64□□□□□ -2.31
PEX3P56589 AC130289.1-201ENST00000577321 73 ntBASIC0.64□□□□□ -2.31
PEX3P56589 Z83818.1-201ENST00000603584 150 ntBASIC0.64□□□□□ -2.31
PEX3P56589 AL136317.1-201ENST00000612653 226 ntBASIC0.64□□□□□ -2.31
PEX3P56589 MIR1-1-201ENST00000362147 71 ntBASIC0.63□□□□□ -2.31
PEX3P56589 MIR30D-201ENST00000362283 70 ntBASIC0.63□□□□□ -2.31
PEX3P56589 RNU6-934P-201ENST00000365154 107 ntBASIC0.63□□□□□ -2.31
PEX3P56589 Y_RNA.351-201ENST00000365436 96 ntBASIC0.63□□□□□ -2.31
PEX3P56589 Y_RNA.354-201ENST00000365448 111 ntBASIC0.63□□□□□ -2.31
PEX3P56589 RNU6-597P-201ENST00000365620 102 ntBASIC0.63□□□□□ -2.31
PEX3P56589 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.63□□□□□ -2.31
PEX3P56589 RNU6-1165P-201ENST00000410119 107 ntBASIC0.63□□□□□ -2.31
PEX3P56589 RNA5SP127-201ENST00000411051 133 ntBASIC0.63□□□□□ -2.31
PEX3P56589 RNA5SP436-201ENST00000516020 115 ntBASIC0.63□□□□□ -2.31
PEX3P56589 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.63□□□□□ -2.31
PEX3P56589 AC020891.4-201ENST00000605745 93 ntBASIC0.63□□□□□ -2.31
PEX3P56589 Y_RNA.274-201ENST00000364714 101 ntBASIC0.62□□□□□ -2.31
PEX3P56589 MIR588-201ENST00000384900 83 ntBASIC0.62□□□□□ -2.31
PEX3P56589 SNORD12C-201ENST00000386307 89 ntBASIC0.62□□□□□ -2.31
PEX3P56589 MT-TG-201ENST00000387429 68 ntBASIC0.62□□□□□ -2.31
PEX3P56589 RNU6-1319P-201ENST00000390855 104 ntBASIC0.62□□□□□ -2.31
PEX3P56589 RNU6-747P-201ENST00000390928 104 ntBASIC0.62□□□□□ -2.31
PEX3P56589 RNU6-241P-201ENST00000391148 104 ntBASIC0.62□□□□□ -2.31
PEX3P56589 RNU6-177P-201ENST00000411257 104 ntBASIC0.62□□□□□ -2.31
PEX3P56589 AC015818.7-201ENST00000428754 109 ntBASIC0.62□□□□□ -2.31
PEX3P56589 AC087499.7-201ENST00000441958 109 ntBASIC0.62□□□□□ -2.31
PEX3P56589 MIR18B-201ENST00000454574 71 ntBASIC0.62□□□□□ -2.31
PEX3P56589 RNU7-80P-201ENST00000459562 61 ntBASIC0.62□□□□□ -2.31
PEX3P56589 COX6CP6-201ENST00000490840 228 ntBASIC0.62□□□□□ -2.31
PEX3P56589 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.62□□□□□ -2.31
PEX3P56589 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.62□□□□□ -2.31
PEX3P56589 MIR4804-201ENST00000581683 73 ntBASIC0.62□□□□□ -2.31
PEX3P56589 AC104465.1-201ENST00000611365 139 ntBASIC0.62□□□□□ -2.31
PEX3P56589 AC010332.2-201ENST00000613083 1904 ntBASIC0.62□□□□□ -2.31
PEX3P56589 Y_RNA.83-201ENST00000363005 113 ntBASIC0.61□□□□□ -2.31
PEX3P56589 RNA5SP499-201ENST00000363982 119 ntBASIC0.61□□□□□ -2.31
PEX3P56589 RNU1-133P-201ENST00000364867 167 ntBASIC0.61□□□□□ -2.31
PEX3P56589 Y_RNA.454-201ENST00000384224 113 ntBASIC0.61□□□□□ -2.31
PEX3P56589 RNU6-110P-201ENST00000384508 104 ntBASIC0.61□□□□□ -2.31
PEX3P56589 MIR573-201ENST00000384964 99 ntBASIC0.61□□□□□ -2.31
PEX3P56589 MIR92A1-201ENST00000385233 78 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 209.6 ms