Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 RNU6-1190P-201ENST00000410811 104 ntBASIC0.72□□□□□ -2.29
LHX1P48742 RNU6-602P-201ENST00000411155 105 ntBASIC0.72□□□□□ -2.29
LHX1P48742 RPS26P5-201ENST00000418544 335 ntBASIC0.72□□□□□ -2.29
LHX1P48742 RNU7-80P-201ENST00000459562 61 ntBASIC0.72□□□□□ -2.29
LHX1P48742 RNU6-1023P-201ENST00000516137 106 ntBASIC0.72□□□□□ -2.29
LHX1P48742 MIR4771-2-201ENST00000577758 74 ntBASIC0.72□□□□□ -2.29
LHX1P48742 MIR4714-201ENST00000580728 77 ntBASIC0.72□□□□□ -2.29
LHX1P48742 MIR4771-1-201ENST00000582617 74 ntBASIC0.72□□□□□ -2.29
LHX1P48742 AL353621.2-201ENST00000605340 133 ntBASIC0.72□□□□□ -2.29
LHX1P48742 MIR376A2-201ENST00000636782 80 ntBASIC0.72□□□□□ -2.29
LHX1P48742 Y_RNA.193-201ENST00000363979 102 ntBASIC0.71□□□□□ -2.3
LHX1P48742 Y_RNA.354-201ENST00000365448 111 ntBASIC0.71□□□□□ -2.3
LHX1P48742 RNU4-70P-201ENST00000384579 139 ntBASIC0.71□□□□□ -2.3
LHX1P48742 AL078595.1-201ENST00000404458 226 ntBASIC0.71□□□□□ -2.3
LHX1P48742 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.71□□□□□ -2.3
LHX1P48742 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.71□□□□□ -2.3
LHX1P48742 Y_RNA.680-201ENST00000516441 93 ntBASIC0.71□□□□□ -2.3
LHX1P48742 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
LHX1P48742 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.71□□□□□ -2.3
LHX1P48742 MIR4308-201ENST00000580634 81 ntBASIC0.71□□□□□ -2.3
LHX1P48742 MIR378D2-201ENST00000580636 98 ntBASIC0.71□□□□□ -2.3
LHX1P48742 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
LHX1P48742 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.7□□□□□ -2.3
LHX1P48742 Y_RNA.182-201ENST00000363880 111 ntBASIC0.7□□□□□ -2.3
LHX1P48742 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
LHX1P48742 Y_RNA.447-201ENST00000384184 113 ntBASIC0.7□□□□□ -2.3
LHX1P48742 Y_RNA.452-201ENST00000384202 108 ntBASIC0.7□□□□□ -2.3
LHX1P48742 Y_RNA.454-201ENST00000384224 113 ntBASIC0.7□□□□□ -2.3
LHX1P48742 Y_RNA.571-201ENST00000384753 98 ntBASIC0.7□□□□□ -2.3
LHX1P48742 MIR588-201ENST00000384900 83 ntBASIC0.7□□□□□ -2.3
LHX1P48742 RNA5SP261-201ENST00000410536 106 ntBASIC0.7□□□□□ -2.3
LHX1P48742 AC006461.1-201ENST00000412637 326 ntBASIC0.7□□□□□ -2.3
LHX1P48742 SEPT7P4-201ENST00000437076 306 ntBASIC0.7□□□□□ -2.3
LHX1P48742 RNU6-977P-201ENST00000516411 103 ntBASIC0.7□□□□□ -2.3
LHX1P48742 MIR3149-201ENST00000584629 83 ntBASIC0.7□□□□□ -2.3
LHX1P48742 MIR4653-201ENST00000585107 83 ntBASIC0.7□□□□□ -2.3
LHX1P48742 MIR6740-201ENST00000618268 113 ntBASIC0.7□□□□□ -2.3
LHX1P48742 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
LHX1P48742 RNU6-369P-201ENST00000362515 102 ntBASIC0.69□□□□□ -2.3
LHX1P48742 Y_RNA.307-201ENST00000365022 117 ntBASIC0.69□□□□□ -2.3
LHX1P48742 RNU6-574P-201ENST00000384265 107 ntBASIC0.69□□□□□ -2.3
LHX1P48742 RNU6-110P-201ENST00000384508 104 ntBASIC0.69□□□□□ -2.3
LHX1P48742 MIR520F-201ENST00000384824 87 ntBASIC0.69□□□□□ -2.3
LHX1P48742 AC015818.7-201ENST00000428754 109 ntBASIC0.69□□□□□ -2.3
LHX1P48742 MTND5P15-201ENST00000434246 349 ntBASIC0.69□□□□□ -2.3
LHX1P48742 AC087499.7-201ENST00000441958 109 ntBASIC0.69□□□□□ -2.3
LHX1P48742 RNU6-111P-201ENST00000517179 105 ntBASIC0.69□□□□□ -2.3
LHX1P48742 AC004812.1-201ENST00000540773 146 ntBASIC0.69□□□□□ -2.3
LHX1P48742 AC011195.1-201ENST00000578177 177 ntBASIC0.69□□□□□ -2.3
LHX1P48742 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.69□□□□□ -2.3
LHX1P48742 AC010332.2-201ENST00000613083 1904 ntBASIC0.69□□□□□ -2.3
LHX1P48742 RNU6-978P-201ENST00000364371 103 ntBASIC0.68□□□□□ -2.3
LHX1P48742 RNU6-643P-201ENST00000384018 107 ntBASIC0.68□□□□□ -2.3
LHX1P48742 RNU1-119P-201ENST00000391122 165 ntBASIC0.68□□□□□ -2.3
LHX1P48742 RNU6-1165P-201ENST00000410119 107 ntBASIC0.68□□□□□ -2.3
LHX1P48742 AL606490.4-201ENST00000423117 127 ntBASIC0.68□□□□□ -2.3
LHX1P48742 MIR18B-201ENST00000454574 71 ntBASIC0.68□□□□□ -2.3
LHX1P48742 snoU13.2-201ENST00000459201 104 ntBASIC0.68□□□□□ -2.3
LHX1P48742 RNU7-45P-201ENST00000459460 63 ntBASIC0.68□□□□□ -2.3
LHX1P48742 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.68□□□□□ -2.3
LHX1P48742 RNU7-70P-201ENST00000516941 66 ntBASIC0.68□□□□□ -2.3
LHX1P48742 MIR6717-201ENST00000622747 73 ntBASIC0.68□□□□□ -2.3
LHX1P48742 AC091932.4-201ENST00000623386 200 ntBASIC0.68□□□□□ -2.3
LHX1P48742 AL596211.1-201ENST00000569873 2277 ntBASIC0.68□□□□□ -2.3
LHX1P48742 HSBP1P2-201ENST00000299671 229 ntBASIC0.67□□□□□ -2.3
LHX1P48742 SNORD12C-201ENST00000386307 89 ntBASIC0.67□□□□□ -2.3
LHX1P48742 RNA5SP127-201ENST00000411051 133 ntBASIC0.67□□□□□ -2.3
LHX1P48742 AC244098.3-201ENST00000424803 96 ntBASIC0.67□□□□□ -2.3
LHX1P48742 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.67□□□□□ -2.3
LHX1P48742 MIR4676-201ENST00000583078 72 ntBASIC0.67□□□□□ -2.3
LHX1P48742 uc_338.6-201ENST00000613544 171 ntBASIC0.67□□□□□ -2.3
LHX1P48742 RNU1-133P-201ENST00000364867 167 ntBASIC0.66□□□□□ -2.3
LHX1P48742 RNU6-275P-201ENST00000364910 107 ntBASIC0.66□□□□□ -2.3
LHX1P48742 RNU6-463P-201ENST00000384340 107 ntBASIC0.66□□□□□ -2.3
LHX1P48742 MIR520H-201ENST00000385126 88 ntBASIC0.66□□□□□ -2.3
LHX1P48742 SNORA26.6-201ENST00000391256 115 ntBASIC0.66□□□□□ -2.3
LHX1P48742 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.66□□□□□ -2.3
LHX1P48742 AC020891.4-201ENST00000605745 93 ntBASIC0.66□□□□□ -2.3
LHX1P48742 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.66□□□□□ -2.3
LHX1P48742 Y_RNA.144-201ENST00000363521 113 ntBASIC0.65□□□□□ -2.31
LHX1P48742 RNY1-201ENST00000364228 113 ntBASIC0.65□□□□□ -2.31
LHX1P48742 SNORA20-201ENST00000384662 132 ntBASIC0.65□□□□□ -2.31
LHX1P48742 COX6CP6-201ENST00000490840 228 ntBASIC0.65□□□□□ -2.31
LHX1P48742 MIR3152-201ENST00000579801 74 ntBASIC0.65□□□□□ -2.31
LHX1P48742 MIR4804-201ENST00000581683 73 ntBASIC0.65□□□□□ -2.31
LHX1P48742 AL162730.1-201ENST00000605734 292 ntBASIC0.65□□□□□ -2.31
LHX1P48742 MIR6515-201ENST00000619843 57 ntBASIC0.65□□□□□ -2.31
LHX1P48742 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
LHX1P48742 Y_RNA.83-201ENST00000363005 113 ntBASIC0.64□□□□□ -2.31
LHX1P48742 Y_RNA.200-201ENST00000364018 102 ntBASIC0.64□□□□□ -2.31
LHX1P48742 Y_RNA.412-201ENST00000384001 104 ntBASIC0.64□□□□□ -2.31
LHX1P48742 MIR624-201ENST00000385217 97 ntBASIC0.64□□□□□ -2.31
LHX1P48742 RNU6-1319P-201ENST00000390855 104 ntBASIC0.64□□□□□ -2.31
LHX1P48742 RNU6-747P-201ENST00000390928 104 ntBASIC0.64□□□□□ -2.31
LHX1P48742 RNU6-241P-201ENST00000391148 104 ntBASIC0.64□□□□□ -2.31
LHX1P48742 RNA5SP222-201ENST00000411039 105 ntBASIC0.64□□□□□ -2.31
LHX1P48742 RNU6-177P-201ENST00000411257 104 ntBASIC0.64□□□□□ -2.31
LHX1P48742 AC004817.2-201ENST00000561794 651 ntBASIC0.64□□□□□ -2.31
LHX1P48742 U6.106-201ENST00000636360 105 ntBASIC0.64□□□□□ -2.31
LHX1P48742 MIR411-201ENST00000362239 96 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms