Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNA5SP404-201ENST00000517118 132 ntBASIC0.95□□□□□ -2.26
HOXD4P09016 MIR3646-201ENST00000578301 84 ntBASIC0.95□□□□□ -2.26
HOXD4P09016 MIR3144-201ENST00000579460 79 ntBASIC0.95□□□□□ -2.26
HOXD4P09016 MIR548AO-201ENST00000579992 96 ntBASIC0.95□□□□□ -2.26
HOXD4P09016 AL022345.2-201ENST00000606307 135 ntBASIC0.95□□□□□ -2.26
HOXD4P09016 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.95□□□□□ -2.26
HOXD4P09016 MTND5P32-201ENST00000560711 1802 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
HOXD4P09016 MIR342-201ENST00000362212 99 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 Y_RNA.52-201ENST00000362760 96 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 Y_RNA.363-201ENST00000365529 113 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 RNU6-209P-201ENST00000384118 107 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 RNU6-913P-201ENST00000390913 95 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 SNORD37.2-201ENST00000391075 66 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 MIR1185-1-201ENST00000408598 86 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 MIR1302-7-201ENST00000408841 72 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 RNU7-96P-201ENST00000459535 64 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 RNU6-1149P-201ENST00000516810 97 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 SCARNA15-202ENST00000516881 127 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 MTND5P41-201ENST00000517498 206 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.94□□□□□ -2.26
HOXD4P09016 HSPE1P19-201ENST00000603327 295 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 AC021753.1-201ENST00000635724 168 ntBASIC0.94□□□□□ -2.26
HOXD4P09016 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.93□□□□□ -2.26
HOXD4P09016 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.93□□□□□ -2.26
HOXD4P09016 MIR103A2-201ENST00000362154 78 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 Y_RNA.36-201ENST00000362602 112 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 RNA5SP264-201ENST00000363115 107 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 RNU6-151P-201ENST00000364158 107 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 RNU4-11P-201ENST00000365287 132 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 Y_RNA.351-201ENST00000365436 96 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 RNU6-449P-201ENST00000383914 107 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 RNU6-910P-201ENST00000390844 107 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 Y_RNA.580-201ENST00000391004 95 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 AL035398.1-201ENST00000430869 322 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 RNU7-73P-201ENST00000458743 63 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 RNU2-11P-201ENST00000459191 187 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 snoU13.16-201ENST00000459350 104 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 SNORA31.4-201ENST00000516049 129 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 PRELID3BP2-201ENST00000605362 201 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 AC091932.4-201ENST00000623386 200 ntBASIC0.93□□□□□ -2.26
HOXD4P09016 Y_RNA.464-201ENST00000384282 110 ntBASIC0.92□□□□□ -2.26
HOXD4P09016 Y_RNA.497-201ENST00000384447 98 ntBASIC0.92□□□□□ -2.26
HOXD4P09016 SNORA75.2-201ENST00000391138 150 ntBASIC0.92□□□□□ -2.26
HOXD4P09016 SNORA75.3-201ENST00000391231 150 ntBASIC0.92□□□□□ -2.26
HOXD4P09016 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.92□□□□□ -2.26
HOXD4P09016 RNU6-1190P-201ENST00000410811 104 ntBASIC0.92□□□□□ -2.26
HOXD4P09016 RNU7-53P-201ENST00000516705 60 ntBASIC0.92□□□□□ -2.26
HOXD4P09016 AC131055.1-201ENST00000584626 316 ntBASIC0.92□□□□□ -2.26
HOXD4P09016 AC211469.2-201ENST00000605461 205 ntBASIC0.92□□□□□ -2.26
HOXD4P09016 Y_RNA.778-201ENST00000620203 90 ntBASIC0.92□□□□□ -2.26
HOXD4P09016 AL596211.1-201ENST00000569873 2277 ntBASIC0.91□□□□□ -2.26
HOXD4P09016 Y_RNA.170-201ENST00000363746 110 ntBASIC0.91□□□□□ -2.26
HOXD4P09016 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.91□□□□□ -2.26
HOXD4P09016 AC090844.1-201ENST00000422019 156 ntBASIC0.91□□□□□ -2.26
HOXD4P09016 HMGN1P33-201ENST00000432945 451 ntBASIC0.91□□□□□ -2.26
HOXD4P09016 AL392103.1-201ENST00000447000 198 ntBASIC0.91□□□□□ -2.26
HOXD4P09016 RNU7-80P-201ENST00000459562 61 ntBASIC0.91□□□□□ -2.26
HOXD4P09016 RNU6-255P-201ENST00000516957 105 ntBASIC0.91□□□□□ -2.26
HOXD4P09016 RNU6-1212P-201ENST00000517023 104 ntBASIC0.91□□□□□ -2.26
HOXD4P09016 RNU2-60P-201ENST00000517290 128 ntBASIC0.91□□□□□ -2.26
HOXD4P09016 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.91□□□□□ -2.26
HOXD4P09016 AC112693.2-201ENST00000556538 232 ntBASIC0.91□□□□□ -2.26
HOXD4P09016 MIR6779-201ENST00000617283 64 ntBASIC0.91□□□□□ -2.26
HOXD4P09016 AL391516.1-201ENST00000554380 2449 ntBASIC0.91□□□□□ -2.26
HOXD4P09016 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.9□□□□□ -2.26
HOXD4P09016 MIR373-201ENST00000362273 69 ntBASIC0.9□□□□□ -2.27
HOXD4P09016 Y_RNA.251-201ENST00000364551 99 ntBASIC0.9□□□□□ -2.27
HOXD4P09016 MIR532-201ENST00000385025 91 ntBASIC0.9□□□□□ -2.27
HOXD4P09016 SNORD12-201ENST00000391002 90 ntBASIC0.9□□□□□ -2.27
HOXD4P09016 RNU7-197P-201ENST00000458836 62 ntBASIC0.9□□□□□ -2.27
HOXD4P09016 RNU7-45P-201ENST00000459460 63 ntBASIC0.9□□□□□ -2.27
HOXD4P09016 SNORD79.1-201ENST00000516069 84 ntBASIC0.9□□□□□ -2.27
HOXD4P09016 RNA5SP236-201ENST00000516169 116 ntBASIC0.9□□□□□ -2.27
HOXD4P09016 SNORA70.22-201ENST00000517160 124 ntBASIC0.9□□□□□ -2.27
HOXD4P09016 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.9□□□□□ -2.27
HOXD4P09016 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.9□□□□□ -2.27
HOXD4P09016 MIR5000-201ENST00000577717 103 ntBASIC0.9□□□□□ -2.27
HOXD4P09016 SNORD114-21-201ENST00000606412 72 ntBASIC0.9□□□□□ -2.27
HOXD4P09016 AL020996.3-201ENST00000606617 222 ntBASIC0.9□□□□□ -2.27
HOXD4P09016 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.9□□□□□ -2.27
HOXD4P09016 RNU6-654P-201ENST00000364373 107 ntBASIC0.89□□□□□ -2.27
HOXD4P09016 RNU4-38P-201ENST00000364472 129 ntBASIC0.89□□□□□ -2.27
HOXD4P09016 RNU1-133P-201ENST00000364867 167 ntBASIC0.89□□□□□ -2.27
HOXD4P09016 Y_RNA.454-201ENST00000384224 113 ntBASIC0.89□□□□□ -2.27
HOXD4P09016 RNU6-125P-201ENST00000384505 107 ntBASIC0.89□□□□□ -2.27
HOXD4P09016 MIR19B1-201ENST00000384829 87 ntBASIC0.89□□□□□ -2.27
HOXD4P09016 RNU7-70P-201ENST00000516941 66 ntBASIC0.89□□□□□ -2.27
HOXD4P09016 MIR8055-201ENST00000610739 97 ntBASIC0.89□□□□□ -2.27
HOXD4P09016 AC012676.2-201ENST00000619258 186 ntBASIC0.89□□□□□ -2.27
HOXD4P09016 MIR6516-201ENST00000630554 81 ntBASIC0.89□□□□□ -2.27
HOXD4P09016 MIR302B-201ENST00000362188 73 ntBASIC0.88□□□□□ -2.27
HOXD4P09016 Y_RNA.330-201ENST00000365230 109 ntBASIC0.88□□□□□ -2.27
HOXD4P09016 Y_RNA.400-201ENST00000383963 111 ntBASIC0.88□□□□□ -2.27
HOXD4P09016 SNORA80D-201ENST00000384488 135 ntBASIC0.88□□□□□ -2.27
HOXD4P09016 Y_RNA.584-201ENST00000391090 114 ntBASIC0.88□□□□□ -2.27
HOXD4P09016 SNORA26.6-201ENST00000391256 115 ntBASIC0.88□□□□□ -2.27
HOXD4P09016 RNA5SP95-201ENST00000410319 137 ntBASIC0.88□□□□□ -2.27
HOXD4P09016 RNU7-21P-201ENST00000459430 62 ntBASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 187.2 ms