Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 RNU6-602P-201ENST00000411155 105 ntBASIC0.49□□□□□ -2.33
VPS54Q9P1Q0 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.49□□□□□ -2.33
VPS54Q9P1Q0 RNU7-56P-201ENST00000458744 62 ntBASIC0.49□□□□□ -2.33
VPS54Q9P1Q0 RNU2-11P-201ENST00000459191 187 ntBASIC0.49□□□□□ -2.33
VPS54Q9P1Q0 MTATP8P1-201ENST00000467115 207 ntBASIC0.49□□□□□ -2.33
VPS54Q9P1Q0 Z83818.1-201ENST00000603584 150 ntBASIC0.49□□□□□ -2.33
VPS54Q9P1Q0 AC243829.3-201ENST00000622177 108 ntBASIC0.49□□□□□ -2.33
VPS54Q9P1Q0 Y_RNA.118-201ENST00000363300 101 ntBASIC0.48□□□□□ -2.33
VPS54Q9P1Q0 RNY1-201ENST00000364228 113 ntBASIC0.48□□□□□ -2.33
VPS54Q9P1Q0 RNU6-1227P-201ENST00000383981 107 ntBASIC0.48□□□□□ -2.33
VPS54Q9P1Q0 MIR936-201ENST00000401264 98 ntBASIC0.48□□□□□ -2.33
VPS54Q9P1Q0 AL606845.1-201ENST00000404881 255 ntBASIC0.48□□□□□ -2.33
VPS54Q9P1Q0 RNU6-177P-201ENST00000411257 104 ntBASIC0.48□□□□□ -2.33
VPS54Q9P1Q0 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.48□□□□□ -2.33
VPS54Q9P1Q0 Y_RNA.199-201ENST00000364014 102 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 SNORA63C-201ENST00000364578 129 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 Y_RNA.304-201ENST00000365011 112 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 RNU6-1189P-201ENST00000383958 107 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 Y_RNA.432-201ENST00000384087 111 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 SNORA1-201ENST00000384107 130 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 Y_RNA.440-201ENST00000384120 114 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 RNU6-713P-201ENST00000384761 107 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 SNORD12C-201ENST00000386307 89 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 SNORD77.3-201ENST00000391113 65 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 SNORA26-201ENST00000391286 122 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 RNU6-1165P-201ENST00000410119 107 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 RNA5SP193-201ENST00000410353 107 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 SNORD2.1-201ENST00000458762 69 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 RNU7-96P-201ENST00000459535 64 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 RNU6-998P-201ENST00000515894 101 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 RNA5SP153-201ENST00000516498 76 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 RNU6-635P-201ENST00000516651 102 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 MIR4711-201ENST00000578274 70 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 MIR3612-201ENST00000579753 87 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 MIR5087-201ENST00000635826 76 ntBASIC0.47□□□□□ -2.33
VPS54Q9P1Q0 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 MIR18A-201ENST00000362310 71 ntBASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 SNORD18A-201ENST00000363753 72 ntBASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 MIR598-201ENST00000384868 97 ntBASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 MIR140-201ENST00000385282 100 ntBASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 MIR938-201ENST00000401216 83 ntBASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 MIR548I3-201ENST00000408378 149 ntBASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.590-201ENST00000410140 107 ntBASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 MIR18B-201ENST00000454574 71 ntBASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 snoU13.2-201ENST00000459201 104 ntBASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 AL442663.2-201ENST00000554385 511 ntBASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 AL162730.1-201ENST00000605734 292 ntBASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 U2.14-201ENST00000615943 113 ntBASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 AL365265.1-201ENST00000621045 234 ntBASIC0.46□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.23-201ENST00000362496 106 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.82-201ENST00000363000 102 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.92-201ENST00000363043 102 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.235-201ENST00000364412 102 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.306-201ENST00000365015 102 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.312-201ENST00000365089 102 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.322-201ENST00000365151 102 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.410-201ENST00000383992 113 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.416-201ENST00000384014 113 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 RNY3P5-201ENST00000384127 102 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 MIR616-201ENST00000385293 97 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 MT-TW-201ENST00000387382 68 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.650-201ENST00000459002 102 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 RNU7-45P-201ENST00000459460 63 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 RNU6-561P-201ENST00000516222 102 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.679-201ENST00000516416 91 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.777-201ENST00000516982 102 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.771-201ENST00000598668 102 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.789-201ENST00000622480 102 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 MIR376A2-201ENST00000636782 80 ntBASIC0.45□□□□□ -2.34
VPS54Q9P1Q0 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.351-201ENST00000365436 96 ntBASIC0.44□□□□□ -2.34
VPS54Q9P1Q0 Y_RNA.483-201ENST00000384380 101 ntBASIC0.44□□□□□ -2.34
VPS54Q9P1Q0 RNU7-185P-201ENST00000459215 60 ntBASIC0.44□□□□□ -2.34
VPS54Q9P1Q0 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.44□□□□□ -2.34
VPS54Q9P1Q0 AC008608.1-201ENST00000603910 127 ntBASIC0.44□□□□□ -2.34
VPS54Q9P1Q0 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.44□□□□□ -2.34
VPS54Q9P1Q0 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.43□□□□□ -2.34
VPS54Q9P1Q0 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.43□□□□□ -2.34
VPS54Q9P1Q0 RNU6-364P-201ENST00000384387 107 ntBASIC0.43□□□□□ -2.34
VPS54Q9P1Q0 MIR125B2-201ENST00000385128 89 ntBASIC0.43□□□□□ -2.34
VPS54Q9P1Q0 RNU6-679P-201ENST00000391003 106 ntBASIC0.43□□□□□ -2.34
VPS54Q9P1Q0 MIR1302-6-201ENST00000408466 90 ntBASIC0.43□□□□□ -2.34
VPS54Q9P1Q0 RN7SKP12-201ENST00000516275 143 ntBASIC0.43□□□□□ -2.34
VPS54Q9P1Q0 MIR3129-201ENST00000581095 76 ntBASIC0.43□□□□□ -2.34
VPS54Q9P1Q0 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.43□□□□□ -2.34
VPS54Q9P1Q0 MIR335-201ENST00000362173 94 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 MIR302B-201ENST00000362188 73 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 MIR489-201ENST00000384923 84 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU6-1319P-201ENST00000390855 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU6-747P-201ENST00000390928 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU6-241P-201ENST00000391148 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU6-447P-201ENST00000410293 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU6-1118P-201ENST00000410382 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU6-1076P-201ENST00000410397 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU6-355P-201ENST00000410427 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU6-791P-201ENST00000410467 104 ntBASIC0.42□□□□□ -2.34
VPS54Q9P1Q0 RNU6-705P-201ENST00000410601 104 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms