Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MIR8055-201ENST00000610739 97 ntBASIC0.57□□□□□ -2.32
CHMP4AQ9BY43 Z97988.1-201ENST00000637697 135 ntBASIC0.57□□□□□ -2.32
CHMP4AQ9BY43 SNORA26-201ENST00000391286 122 ntBASIC0.56□□□□□ -2.32
CHMP4AQ9BY43 AF228730.3-201ENST00000436691 102 ntBASIC0.56□□□□□ -2.32
CHMP4AQ9BY43 RNU2-11P-201ENST00000459191 187 ntBASIC0.56□□□□□ -2.32
CHMP4AQ9BY43 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.56□□□□□ -2.32
CHMP4AQ9BY43 RNA5SP480-201ENST00000516840 109 ntBASIC0.56□□□□□ -2.32
CHMP4AQ9BY43 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.56□□□□□ -2.32
CHMP4AQ9BY43 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.56□□□□□ -2.32
CHMP4AQ9BY43 MIR18A-201ENST00000362310 71 ntBASIC0.55□□□□□ -2.32
CHMP4AQ9BY43 Y_RNA.44-201ENST00000362676 108 ntBASIC0.55□□□□□ -2.32
CHMP4AQ9BY43 Y_RNA.91-201ENST00000363042 107 ntBASIC0.55□□□□□ -2.32
CHMP4AQ9BY43 MT-TT-201ENST00000387460 66 ntBASIC0.55□□□□□ -2.32
CHMP4AQ9BY43 MIR938-201ENST00000401216 83 ntBASIC0.55□□□□□ -2.32
CHMP4AQ9BY43 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.55□□□□□ -2.32
CHMP4AQ9BY43 AC243829.6-201ENST00000612652 106 ntBASIC0.55□□□□□ -2.32
CHMP4AQ9BY43 Y_RNA.66-201ENST00000362862 102 ntBASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 RNU6-1189P-201ENST00000383958 107 ntBASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 Y_RNA.432-201ENST00000384087 111 ntBASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 RNU6-364P-201ENST00000384387 107 ntBASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 SNORD77.3-201ENST00000391113 65 ntBASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 MIR548I3-201ENST00000408378 149 ntBASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 RNU6-1165P-201ENST00000410119 107 ntBASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 RNU6-985P-201ENST00000410182 104 ntBASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 RNU6-1190P-201ENST00000410811 104 ntBASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 RNU6-602P-201ENST00000411155 105 ntBASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 RNU7-56P-201ENST00000458744 62 ntBASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 RNU7-96P-201ENST00000459535 64 ntBASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 uc_338.16-201ENST00000621804 95 ntBASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC0.54□□□□□ -2.32
CHMP4AQ9BY43 RNU6-797P-201ENST00000363101 109 ntBASIC0.53□□□□□ -2.32
CHMP4AQ9BY43 SNORD114-23-201ENST00000363536 72 ntBASIC0.53□□□□□ -2.32
CHMP4AQ9BY43 Y_RNA.199-201ENST00000364014 102 ntBASIC0.53□□□□□ -2.32
CHMP4AQ9BY43 RNU6-740P-201ENST00000364734 105 ntBASIC0.53□□□□□ -2.32
CHMP4AQ9BY43 Y_RNA.634-201ENST00000364811 113 ntBASIC0.53□□□□□ -2.32
CHMP4AQ9BY43 RNU6-639P-201ENST00000384074 107 ntBASIC0.53□□□□□ -2.32
CHMP4AQ9BY43 RNY1P4-201ENST00000384595 115 ntBASIC0.53□□□□□ -2.32
CHMP4AQ9BY43 MIR1257-201ENST00000408490 117 ntBASIC0.53□□□□□ -2.32
CHMP4AQ9BY43 RNA5SP193-201ENST00000410353 107 ntBASIC0.53□□□□□ -2.32
CHMP4AQ9BY43 MIR18B-201ENST00000454574 71 ntBASIC0.53□□□□□ -2.32
CHMP4AQ9BY43 TRBVB-201ENST00000477100 408 ntBASIC0.53□□□□□ -2.32
CHMP4AQ9BY43 RNA5SP436-201ENST00000516020 115 ntBASIC0.53□□□□□ -2.32
CHMP4AQ9BY43 SNORD18A-201ENST00000363753 72 ntBASIC0.52□□□□□ -2.33
CHMP4AQ9BY43 RNU6-1327P-201ENST00000365302 105 ntBASIC0.52□□□□□ -2.33
CHMP4AQ9BY43 SNORA33.2-201ENST00000365413 134 ntBASIC0.52□□□□□ -2.33
CHMP4AQ9BY43 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.52□□□□□ -2.33
CHMP4AQ9BY43 RNU6-713P-201ENST00000384761 107 ntBASIC0.52□□□□□ -2.33
CHMP4AQ9BY43 RNU2-55P-201ENST00000411146 174 ntBASIC0.52□□□□□ -2.33
CHMP4AQ9BY43 RNU6-998P-201ENST00000515894 101 ntBASIC0.52□□□□□ -2.33
CHMP4AQ9BY43 AC010487.4-201ENST00000637027 61 ntBASIC0.52□□□□□ -2.33
CHMP4AQ9BY43 MIR302B-201ENST00000362188 73 ntBASIC0.51□□□□□ -2.33
CHMP4AQ9BY43 Y_RNA.237-201ENST00000364439 102 ntBASIC0.51□□□□□ -2.33
CHMP4AQ9BY43 VTRNA1-3-201ENST00000365645 89 ntBASIC0.51□□□□□ -2.33
CHMP4AQ9BY43 Y_RNA.410-201ENST00000383992 113 ntBASIC0.51□□□□□ -2.33
CHMP4AQ9BY43 SNORD12C-201ENST00000386307 89 ntBASIC0.51□□□□□ -2.33
CHMP4AQ9BY43 RNU6-679P-201ENST00000391003 106 ntBASIC0.51□□□□□ -2.33
CHMP4AQ9BY43 snoU13.2-201ENST00000459201 104 ntBASIC0.51□□□□□ -2.33
CHMP4AQ9BY43 RNU7-185P-201ENST00000459215 60 ntBASIC0.51□□□□□ -2.33
CHMP4AQ9BY43 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.51□□□□□ -2.33
CHMP4AQ9BY43 Y_RNA.304-201ENST00000365011 112 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-484P-201ENST00000384016 107 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 Y_RNA.440-201ENST00000384120 114 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 MIR125B2-201ENST00000385128 89 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-1319P-201ENST00000390855 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-747P-201ENST00000390928 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-241P-201ENST00000391148 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 AL606845.1-201ENST00000404881 255 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-447P-201ENST00000410293 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-1118P-201ENST00000410382 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-1076P-201ENST00000410397 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-355P-201ENST00000410427 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-791P-201ENST00000410467 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-705P-201ENST00000410601 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-1100P-201ENST00000410691 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-860P-201ENST00000410860 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-651P-201ENST00000411040 105 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-1217P-201ENST00000411276 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNU6-785P-201ENST00000411324 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 SNRPGP8-201ENST00000454064 226 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 Y_RNA.679-201ENST00000516416 91 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 RNA5SP134-201ENST00000516492 96 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 Y_RNA.701-201ENST00000516812 110 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 U6.90-201ENST00000614007 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 U6.70-201ENST00000620287 104 ntBASIC0.5□□□□□ -2.33
CHMP4AQ9BY43 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 MIRLET7D-201ENST00000362263 87 ntBASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 RNY3P5-201ENST00000384127 102 ntBASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 Y_RNA.540-201ENST00000384638 111 ntBASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 RNU6-1228P-201ENST00000391014 107 ntBASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 Y_RNA.590-201ENST00000410140 107 ntBASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 SNORD71-201ENST00000411292 86 ntBASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 RNU7-102P-201ENST00000458948 62 ntBASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 SNORA68.3-201ENST00000515906 83 ntBASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 RNA5SP153-201ENST00000516498 76 ntBASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 RNU6-453P-201ENST00000516819 85 ntBASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 RNU7-156P-201ENST00000517214 74 ntBASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 AC044792.1-201ENST00000593294 196 ntBASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 AC008608.1-201ENST00000603910 127 ntBASIC0.49□□□□□ -2.33
CHMP4AQ9BY43 AP001282.2-201ENST00000616149 309 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms