Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 MIR4724-201ENST00000579485 89 ntBASIC1.34□□□□□ -2.19
HERPUD2Q9BSE4 Pinc.1-201ENST00000616452 154 ntBASIC1.34□□□□□ -2.19
HERPUD2Q9BSE4 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 AL391516.1-201ENST00000554380 2449 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-268P-201ENST00000364174 107 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.337-201ENST00000365312 102 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-80P-201ENST00000384195 107 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-1067P-201ENST00000384752 107 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 SNORD72-201ENST00000390994 80 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 RNA5SP496-201ENST00000391240 109 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.622-201ENST00000411091 108 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.630-201ENST00000411370 108 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 AL121914.1-201ENST00000450188 156 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-1211P-201ENST00000459179 105 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 MIR3660-201ENST00000584845 100 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 PRELID3BP2-201ENST00000605362 201 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 AL157834.3-201ENST00000615543 103 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 AL353770.2-201ENST00000620024 78 ntBASIC1.33□□□□□ -2.2
HERPUD2Q9BSE4 MIR337-201ENST00000362281 93 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.91-201ENST00000363042 107 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 RNU1-124P-201ENST00000363861 145 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 RNA5SP48-201ENST00000363969 126 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-153P-201ENST00000364422 104 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.273-201ENST00000364703 102 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.363-201ENST00000365529 113 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-597P-201ENST00000365620 102 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.393-201ENST00000383936 102 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 RNY4P18-201ENST00000391107 89 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 AL035461.1-201ENST00000421490 332 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 AC008267.6-201ENST00000441664 139 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 TRMT112P2-201ENST00000512910 132 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 RNU7-41P-201ENST00000515917 61 ntBASIC1.32□□□□□ -2.2
HERPUD2Q9BSE4 MTND5P32-201ENST00000560711 1802 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 MIR103A2-201ENST00000362154 78 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.66-201ENST00000362862 102 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 RNA5SP264-201ENST00000363115 107 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-1325P-201ENST00000364905 105 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.327-201ENST00000365201 102 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.587-201ENST00000391210 103 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 AC002429.1-201ENST00000437672 148 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-830P-201ENST00000516353 107 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.712-201ENST00000517011 92 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 IGKV1-22-201ENST00000524313 326 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 MIR3646-201ENST00000578301 84 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 MIR3121-201ENST00000579680 77 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 AC015726.2-201ENST00000620112 122 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 MIR376A2-201ENST00000636782 80 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 AC008163.1-202ENST00000636004 2889 ntBASIC1.31□□□□□ -2.2
HERPUD2Q9BSE4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.4-201ENST00000362333 112 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-235P-201ENST00000362644 107 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 RNY3P5-201ENST00000384127 102 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.486-201ENST00000384398 107 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 SNORA40.6-201ENST00000391153 128 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 SNRPGP14-201ENST00000435400 219 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 RNU7-90P-201ENST00000459216 62 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.651-201ENST00000459380 103 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 SNORD77.4-201ENST00000516158 81 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-919P-201ENST00000516731 104 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 AC007751.1-201ENST00000529260 376 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 MIR378D2-201ENST00000580636 98 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 AL049861.1-201ENST00000603130 150 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 AC097639.2-201ENST00000603159 172 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 AC006441.5-201ENST00000612680 209 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 uc_338.4-201ENST00000616635 176 ntBASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
HERPUD2Q9BSE4 SNORA63.4-201ENST00000362763 126 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 SNORA25.3-201ENST00000363205 127 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-309P-201ENST00000364573 106 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-392P-201ENST00000364926 101 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-915P-201ENST00000364943 103 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-728P-201ENST00000365375 104 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 MIR19B1-201ENST00000384829 87 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 MIR548A2-201ENST00000384956 97 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 MIRLET7F2-201ENST00000385277 83 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 U8.17-201ENST00000391292 132 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 MIR513C-201ENST00000401352 84 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 RNU7-21P-201ENST00000459430 62 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.676-201ENST00000516393 96 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-197P-201ENST00000516680 100 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 MIR548AR-201ENST00000582191 57 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 MIR6844-201ENST00000637122 62 ntBASIC1.29□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.634-201ENST00000364811 113 ntBASIC1.28□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.330-201ENST00000365230 109 ntBASIC1.28□□□□□ -2.2
HERPUD2Q9BSE4 SNORA1-201ENST00000384107 130 ntBASIC1.28□□□□□ -2.2
HERPUD2Q9BSE4 SNORA75.5-201ENST00000391291 81 ntBASIC1.28□□□□□ -2.2
HERPUD2Q9BSE4 Y_RNA.617-201ENST00000410920 90 ntBASIC1.28□□□□□ -2.2
HERPUD2Q9BSE4 snoU13.25-201ENST00000458945 104 ntBASIC1.28□□□□□ -2.2
HERPUD2Q9BSE4 RPS23P4-201ENST00000487908 423 ntBASIC1.28□□□□□ -2.2
HERPUD2Q9BSE4 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.28□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-781P-201ENST00000516377 101 ntBASIC1.28□□□□□ -2.2
HERPUD2Q9BSE4 RNU6-589P-201ENST00000516485 107 ntBASIC1.28□□□□□ -2.2
HERPUD2Q9BSE4 RNU7-149P-201ENST00000516739 59 ntBASIC1.28□□□□□ -2.2
HERPUD2Q9BSE4 AC108081.1-201ENST00000604358 221 ntBASIC1.28□□□□□ -2.2
HERPUD2Q9BSE4 MIR6078-201ENST00000611069 100 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 198.1 ms