Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 MIR3144-201ENST00000579460 79 ntBASIC1.26□□□□□ -2.21
NPAS1Q99742 AC131055.1-201ENST00000584626 316 ntBASIC1.26□□□□□ -2.21
NPAS1Q99742 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.26□□□□□ -2.21
NPAS1Q99742 Y_RNA.778-201ENST00000620203 90 ntBASIC1.26□□□□□ -2.21
NPAS1Q99742 U8.1-201ENST00000362843 134 ntBASIC1.25□□□□□ -2.21
NPAS1Q99742 SNORA1.1-201ENST00000364671 133 ntBASIC1.25□□□□□ -2.21
NPAS1Q99742 RNU6-1130P-201ENST00000365434 107 ntBASIC1.25□□□□□ -2.21
NPAS1Q99742 RNU6-209P-201ENST00000384118 107 ntBASIC1.25□□□□□ -2.21
NPAS1Q99742 SNORA25-201ENST00000384384 134 ntBASIC1.25□□□□□ -2.21
NPAS1Q99742 Y_RNA.584-201ENST00000391090 114 ntBASIC1.25□□□□□ -2.21
NPAS1Q99742 MIR548I3-201ENST00000408378 149 ntBASIC1.25□□□□□ -2.21
NPAS1Q99742 RNU7-73P-201ENST00000458743 63 ntBASIC1.25□□□□□ -2.21
NPAS1Q99742 snoU13.25-201ENST00000458945 104 ntBASIC1.25□□□□□ -2.21
NPAS1Q99742 AL022345.2-201ENST00000606307 135 ntBASIC1.25□□□□□ -2.21
NPAS1Q99742 AC091932.4-201ENST00000623386 200 ntBASIC1.25□□□□□ -2.21
NPAS1Q99742 Y_RNA.398-201ENST00000383952 99 ntBASIC1.24□□□□□ -2.21
NPAS1Q99742 SNORA24-201ENST00000384096 131 ntBASIC1.24□□□□□ -2.21
NPAS1Q99742 SNORA20-201ENST00000384662 132 ntBASIC1.24□□□□□ -2.21
NPAS1Q99742 RNA5SP261-201ENST00000410536 106 ntBASIC1.24□□□□□ -2.21
NPAS1Q99742 RNU6-394P-201ENST00000410735 107 ntBASIC1.24□□□□□ -2.21
NPAS1Q99742 MTATP6P21-201ENST00000440681 189 ntBASIC1.24□□□□□ -2.21
NPAS1Q99742 RNU5E-3P-201ENST00000515913 68 ntBASIC1.24□□□□□ -2.21
NPAS1Q99742 MIR2115-201ENST00000516657 100 ntBASIC1.24□□□□□ -2.21
NPAS1Q99742 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.24□□□□□ -2.21
NPAS1Q99742 MIR3152-201ENST00000579801 74 ntBASIC1.24□□□□□ -2.21
NPAS1Q99742 PRELID3BP2-201ENST00000605362 201 ntBASIC1.24□□□□□ -2.21
NPAS1Q99742 ZNF209P-201ENST00000593450 2304 ntBASIC1.24□□□□□ -2.21
NPAS1Q99742 AC008163.1-202ENST00000636004 2889 ntBASIC1.23□□□□□ -2.21
NPAS1Q99742 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
NPAS1Q99742 Y_RNA.52-201ENST00000362760 96 ntBASIC1.23□□□□□ -2.21
NPAS1Q99742 SNORD26-201ENST00000384147 75 ntBASIC1.23□□□□□ -2.21
NPAS1Q99742 SNORD38B-201ENST00000384690 67 ntBASIC1.23□□□□□ -2.21
NPAS1Q99742 RNU6-913P-201ENST00000390913 95 ntBASIC1.23□□□□□ -2.21
NPAS1Q99742 PCNPP3-201ENST00000393579 471 ntBASIC1.23□□□□□ -2.21
NPAS1Q99742 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.23□□□□□ -2.21
NPAS1Q99742 AC004223.1-201ENST00000479840 271 ntBASIC1.23□□□□□ -2.21
NPAS1Q99742 RNA5SP458-201ENST00000516188 119 ntBASIC1.23□□□□□ -2.21
NPAS1Q99742 RNU1-92P-201ENST00000517017 135 ntBASIC1.23□□□□□ -2.21
NPAS1Q99742 AP000753.3-201ENST00000604083 169 ntBASIC1.23□□□□□ -2.21
NPAS1Q99742 AL512598.1-201ENST00000610158 273 ntBASIC1.23□□□□□ -2.21
NPAS1Q99742 SNORD38B-202ENST00000625943 69 ntBASIC1.23□□□□□ -2.21
NPAS1Q99742 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
NPAS1Q99742 MIR378A-201ENST00000362177 66 ntBASIC1.22□□□□□ -2.21
NPAS1Q99742 Y_RNA.180-201ENST00000363867 113 ntBASIC1.22□□□□□ -2.21
NPAS1Q99742 Y_RNA.497-201ENST00000384447 98 ntBASIC1.22□□□□□ -2.21
NPAS1Q99742 MIR1185-1-201ENST00000408598 86 ntBASIC1.22□□□□□ -2.21
NPAS1Q99742 HMGN1P33-201ENST00000432945 451 ntBASIC1.22□□□□□ -2.21
NPAS1Q99742 RNU7-90P-201ENST00000459216 62 ntBASIC1.22□□□□□ -2.21
NPAS1Q99742 RNU7-45P-201ENST00000459460 63 ntBASIC1.22□□□□□ -2.21
NPAS1Q99742 RNU11-2P-201ENST00000516898 142 ntBASIC1.22□□□□□ -2.21
NPAS1Q99742 AC068338.1-201ENST00000565567 176 ntBASIC1.22□□□□□ -2.21
NPAS1Q99742 MIR4421-201ENST00000578133 69 ntBASIC1.22□□□□□ -2.21
NPAS1Q99742 AC021753.1-201ENST00000635724 168 ntBASIC1.22□□□□□ -2.21
NPAS1Q99742 Y_RNA.363-201ENST00000365529 113 ntBASIC1.21□□□□□ -2.22
NPAS1Q99742 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
NPAS1Q99742 Y_RNA.580-201ENST00000391004 95 ntBASIC1.21□□□□□ -2.22
NPAS1Q99742 SNORA75.2-201ENST00000391138 150 ntBASIC1.21□□□□□ -2.22
NPAS1Q99742 SNORA75.3-201ENST00000391231 150 ntBASIC1.21□□□□□ -2.22
NPAS1Q99742 RNU1-123P-201ENST00000458950 160 ntBASIC1.21□□□□□ -2.22
NPAS1Q99742 AC023827.1-201ENST00000569247 97 ntBASIC1.21□□□□□ -2.22
NPAS1Q99742 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.21□□□□□ -2.22
NPAS1Q99742 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.21□□□□□ -2.22
NPAS1Q99742 SEPT14P17-201ENST00000617978 177 ntBASIC1.21□□□□□ -2.22
NPAS1Q99742 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.2□□□□□ -2.22
NPAS1Q99742 SNORA2B-201ENST00000384583 137 ntBASIC1.2□□□□□ -2.22
NPAS1Q99742 MT-TR-201ENST00000387439 65 ntBASIC1.2□□□□□ -2.22
NPAS1Q99742 SNORD79.1-201ENST00000516069 84 ntBASIC1.2□□□□□ -2.22
NPAS1Q99742 SNORA25.12-201ENST00000516202 82 ntBASIC1.2□□□□□ -2.22
NPAS1Q99742 AL020996.3-201ENST00000606617 222 ntBASIC1.2□□□□□ -2.22
NPAS1Q99742 MIR6516-201ENST00000630554 81 ntBASIC1.2□□□□□ -2.22
NPAS1Q99742 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.19□□□□□ -2.22
NPAS1Q99742 SNORA7.1-201ENST00000363750 139 ntBASIC1.19□□□□□ -2.22
NPAS1Q99742 RNU4-16P-201ENST00000364737 141 ntBASIC1.19□□□□□ -2.22
NPAS1Q99742 Y_RNA.354-201ENST00000365448 111 ntBASIC1.19□□□□□ -2.22
NPAS1Q99742 Y_RNA.464-201ENST00000384282 110 ntBASIC1.19□□□□□ -2.22
NPAS1Q99742 RNU6-205P-201ENST00000390858 107 ntBASIC1.19□□□□□ -2.22
NPAS1Q99742 RNU6-1190P-201ENST00000410811 104 ntBASIC1.19□□□□□ -2.22
NPAS1Q99742 RPS3AP1-201ENST00000413190 320 ntBASIC1.19□□□□□ -2.22
NPAS1Q99742 AC063976.4-201ENST00000421971 163 ntBASIC1.19□□□□□ -2.22
NPAS1Q99742 RNU7-21P-201ENST00000459430 62 ntBASIC1.19□□□□□ -2.22
NPAS1Q99742 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.19□□□□□ -2.22
NPAS1Q99742 SCARNA15-202ENST00000516881 127 ntBASIC1.19□□□□□ -2.22
NPAS1Q99742 AP003716.2-201ENST00000528260 108 ntBASIC1.19□□□□□ -2.22
NPAS1Q99742 RNU6-654P-201ENST00000364373 107 ntBASIC1.18□□□□□ -2.22
NPAS1Q99742 Y_RNA.400-201ENST00000383963 111 ntBASIC1.18□□□□□ -2.22
NPAS1Q99742 RNU6-939P-201ENST00000384634 107 ntBASIC1.18□□□□□ -2.22
NPAS1Q99742 SNORD12-201ENST00000391002 90 ntBASIC1.18□□□□□ -2.22
NPAS1Q99742 MIR1302-7-201ENST00000408841 72 ntBASIC1.18□□□□□ -2.22
NPAS1Q99742 RNA5SP95-201ENST00000410319 137 ntBASIC1.18□□□□□ -2.22
NPAS1Q99742 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.18□□□□□ -2.22
NPAS1Q99742 AL392103.1-201ENST00000447000 198 ntBASIC1.18□□□□□ -2.22
NPAS1Q99742 MTND5P41-201ENST00000517498 206 ntBASIC1.18□□□□□ -2.22
NPAS1Q99742 MIR548X2-201ENST00000579776 100 ntBASIC1.18□□□□□ -2.22
NPAS1Q99742 MIR8055-201ENST00000610739 97 ntBASIC1.18□□□□□ -2.22
NPAS1Q99742 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.17□□□□□ -2.22
NPAS1Q99742 Y_RNA.215-201ENST00000364204 112 ntBASIC1.17□□□□□ -2.22
NPAS1Q99742 RNY1P6-201ENST00000384193 109 ntBASIC1.17□□□□□ -2.22
NPAS1Q99742 RNU6-994P-201ENST00000410507 111 ntBASIC1.17□□□□□ -2.22
NPAS1Q99742 AC090844.1-201ENST00000422019 156 ntBASIC1.17□□□□□ -2.22
NPAS1Q99742 AC002429.1-201ENST00000437672 148 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms