Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 RNU6-988P-201ENST00000519081 107 ntBASIC0.32□□□□□ -2.36
SCN1AP35498 MIR335-201ENST00000362173 94 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 Y_RNA.19-201ENST00000362462 99 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 Y_RNA.216-201ENST00000364205 93 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 RNU6-1189P-201ENST00000383958 107 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 Y_RNA.547-201ENST00000384654 119 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 RNU6-713P-201ENST00000384761 107 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 SNORA26.6-201ENST00000391256 115 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 AC002350.1-201ENST00000490759 375 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 AL365205.2-201ENST00000594586 68 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 Y_RNA.42-201ENST00000362660 108 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 SNORD45.3-201ENST00000363836 72 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 Y_RNA.217-201ENST00000364214 105 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 Y_RNA.641-201ENST00000459414 105 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.31□□□□□ -2.36
SCN1AP35498 AC036111.3-201ENST00000526389 112 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 AL162730.1-201ENST00000605734 292 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 MIR2909-201ENST00000617113 69 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 MIR5087-201ENST00000635826 76 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 Z97988.1-201ENST00000637697 135 ntBASIC0.31□□□□□ -2.36
SCN1AP35498 MIR103A1-201ENST00000362165 78 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 MIR302B-201ENST00000362188 73 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 SNORA9.1-201ENST00000362412 131 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.82-201ENST00000363000 102 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.92-201ENST00000363043 102 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.199-201ENST00000364014 102 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.235-201ENST00000364412 102 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.306-201ENST00000365015 102 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.308-201ENST00000365043 101 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.312-201ENST00000365089 102 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.322-201ENST00000365151 102 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 MIR125B2-201ENST00000385128 89 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 SNORA26-201ENST00000391286 122 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.650-201ENST00000459002 102 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.777-201ENST00000516982 102 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 MTND5P34-201ENST00000568888 325 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.771-201ENST00000598668 102 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 AC023932.2-201ENST00000603176 175 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.789-201ENST00000622480 102 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.351-201ENST00000365436 96 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 RNU4-70P-201ENST00000384579 139 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 RNA5SP63-201ENST00000391225 112 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.3□□□□□ -2.36
SCN1AP35498 HMGN1P33-201ENST00000432945 451 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 AC107297.1-201ENST00000459991 176 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.3□□□□□ -2.36
SCN1AP35498 Y_RNA.701-201ENST00000516812 110 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 MIR3152-201ENST00000579801 74 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 AC044792.1-201ENST00000593294 196 ntBASIC0.3□□□□□ -2.36
SCN1AP35498 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.29□□□□□ -2.36
SCN1AP35498 Y_RNA.293-201ENST00000364908 93 ntBASIC0.29□□□□□ -2.36
SCN1AP35498 Y_RNA.432-201ENST00000384087 111 ntBASIC0.29□□□□□ -2.36
SCN1AP35498 RNU6-662P-201ENST00000384253 104 ntBASIC0.29□□□□□ -2.36
SCN1AP35498 Y_RNA.486-201ENST00000384398 107 ntBASIC0.29□□□□□ -2.36
SCN1AP35498 RNU6-1160P-201ENST00000384546 104 ntBASIC0.29□□□□□ -2.36
SCN1AP35498 MIR526A2-201ENST00000390198 65 ntBASIC0.29□□□□□ -2.36
SCN1AP35498 Y_RNA.590-201ENST00000410140 107 ntBASIC0.29□□□□□ -2.36
SCN1AP35498 RNU6-938P-201ENST00000411285 103 ntBASIC0.29□□□□□ -2.36
SCN1AP35498 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.29□□□□□ -2.36
SCN1AP35498 MTCO2P24-201ENST00000515611 426 ntBASIC0.29□□□□□ -2.36
SCN1AP35498 MIR4667-201ENST00000578933 66 ntBASIC0.29□□□□□ -2.36
SCN1AP35498 snoU18.1-201ENST00000629629 71 ntBASIC0.29□□□□□ -2.36
SCN1AP35498 RNU6-797P-201ENST00000363101 109 ntBASIC0.28□□□□□ -2.36
SCN1AP35498 Y_RNA.380-201ENST00000365663 111 ntBASIC0.28□□□□□ -2.36
SCN1AP35498 AL606845.1-201ENST00000404881 255 ntBASIC0.28□□□□□ -2.36
SCN1AP35498 MIR1257-201ENST00000408490 117 ntBASIC0.28□□□□□ -2.36
SCN1AP35498 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.28□□□□□ -2.36
SCN1AP35498 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.28□□□□□ -2.36
SCN1AP35498 RNU7-96P-201ENST00000459535 64 ntBASIC0.28□□□□□ -2.36
SCN1AP35498 AP003072.1-201ENST00000531740 145 ntBASIC0.28□□□□□ -2.36
SCN1AP35498 AC090897.1-201ENST00000580909 226 ntBASIC0.28□□□□□ -2.36
SCN1AP35498 Y_RNA.802-201ENST00000614892 130 ntBASIC0.28□□□□□ -2.36
SCN1AP35498 AC067863.3-201ENST00000624172 122 ntBASIC0.28□□□□□ -2.36
SCN1AP35498 Y_RNA.91-201ENST00000363042 107 ntBASIC0.28□□□□□ -2.37
SCN1AP35498 Y_RNA.117-201ENST00000363294 101 ntBASIC0.28□□□□□ -2.37
SCN1AP35498 Y_RNA.410-201ENST00000383992 113 ntBASIC0.28□□□□□ -2.37
SCN1AP35498 RNU6-1203P-201ENST00000410703 110 ntBASIC0.28□□□□□ -2.37
SCN1AP35498 SNORD2.1-201ENST00000458762 69 ntBASIC0.28□□□□□ -2.37
SCN1AP35498 RNA5SP121-201ENST00000516537 101 ntBASIC0.28□□□□□ -2.37
SCN1AP35498 Y_RNA.711-201ENST00000516993 102 ntBASIC0.28□□□□□ -2.37
SCN1AP35498 MIR367-201ENST00000362299 68 ntBASIC0.27□□□□□ -2.37
SCN1AP35498 Y_RNA.203-201ENST00000364106 102 ntBASIC0.27□□□□□ -2.37
SCN1AP35498 SNORD61-201ENST00000384252 73 ntBASIC0.27□□□□□ -2.37
SCN1AP35498 RNU6-472P-201ENST00000384299 107 ntBASIC0.27□□□□□ -2.37
SCN1AP35498 Y_RNA.476-201ENST00000384347 108 ntBASIC0.27□□□□□ -2.37
SCN1AP35498 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.27□□□□□ -2.37
SCN1AP35498 RNU6-651P-201ENST00000411040 105 ntBASIC0.27□□□□□ -2.37
SCN1AP35498 RNU6-504P-201ENST00000516568 104 ntBASIC0.27□□□□□ -2.37
SCN1AP35498 SNORD92-201ENST00000585078 85 ntBASIC0.27□□□□□ -2.37
SCN1AP35498 SNORA25.18-201ENST00000607153 114 ntBASIC0.27□□□□□ -2.37
SCN1AP35498 SNORD77.3-201ENST00000391113 65 ntBASIC0.26□□□□□ -2.37
SCN1AP35498 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.26□□□□□ -2.37
SCN1AP35498 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.26□□□□□ -2.37
SCN1AP35498 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.26□□□□□ -2.37
SCN1AP35498 Y_RNA.85-201ENST00000363014 111 ntBASIC0.26□□□□□ -2.37
SCN1AP35498 SNORA50A-201ENST00000384225 134 ntBASIC0.26□□□□□ -2.37
SCN1AP35498 Y_RNA.569-201ENST00000384749 103 ntBASIC0.26□□□□□ -2.37
SCN1AP35498 RNU6-1109P-201ENST00000391187 107 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 187.8 ms