Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC090897.1-201ENST00000580909 226 ntBASIC0.31□□□□□ -2.36
SHMT2P34897 MIR3171-201ENST00000584270 74 ntBASIC0.31□□□□□ -2.36
SHMT2P34897 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.31□□□□□ -2.36
SHMT2P34897 RNU6-1289P-201ENST00000384431 106 ntBASIC0.3□□□□□ -2.36
SHMT2P34897 MIR125B2-201ENST00000385128 89 ntBASIC0.3□□□□□ -2.36
SHMT2P34897 MIR1257-201ENST00000408490 117 ntBASIC0.3□□□□□ -2.36
SHMT2P34897 SNORD100-201ENST00000408573 76 ntBASIC0.3□□□□□ -2.36
SHMT2P34897 AL138752.1-201ENST00000452964 351 ntBASIC0.3□□□□□ -2.36
SHMT2P34897 RNU7-102P-201ENST00000458948 62 ntBASIC0.3□□□□□ -2.36
SHMT2P34897 RNU2-11P-201ENST00000459191 187 ntBASIC0.3□□□□□ -2.36
SHMT2P34897 RNU7-185P-201ENST00000459215 60 ntBASIC0.3□□□□□ -2.36
SHMT2P34897 AC020661.2-201ENST00000560114 134 ntBASIC0.3□□□□□ -2.36
SHMT2P34897 RN7SL793P-201ENST00000583259 296 ntBASIC0.3□□□□□ -2.36
SHMT2P34897 AC097639.2-201ENST00000603159 172 ntBASIC0.3□□□□□ -2.36
SHMT2P34897 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.3□□□□□ -2.36
SHMT2P34897 MIR7111-201ENST00000619751 72 ntBASIC0.3□□□□□ -2.36
SHMT2P34897 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
SHMT2P34897 MIR30D-201ENST00000362283 70 ntBASIC0.29□□□□□ -2.36
SHMT2P34897 Y_RNA.61-201ENST00000362835 102 ntBASIC0.29□□□□□ -2.36
SHMT2P34897 Y_RNA.634-201ENST00000364811 113 ntBASIC0.29□□□□□ -2.36
SHMT2P34897 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.29□□□□□ -2.36
SHMT2P34897 Y_RNA.393-201ENST00000383936 102 ntBASIC0.29□□□□□ -2.36
SHMT2P34897 Y_RNA.440-201ENST00000384120 114 ntBASIC0.29□□□□□ -2.36
SHMT2P34897 SNORD77.3-201ENST00000391113 65 ntBASIC0.29□□□□□ -2.36
SHMT2P34897 RNU6-1203P-201ENST00000410703 110 ntBASIC0.29□□□□□ -2.36
SHMT2P34897 RNU2-55P-201ENST00000411146 174 ntBASIC0.29□□□□□ -2.36
SHMT2P34897 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.29□□□□□ -2.36
SHMT2P34897 RNU6-1137P-201ENST00000517073 99 ntBASIC0.29□□□□□ -2.36
SHMT2P34897 SNORD92-201ENST00000585078 85 ntBASIC0.29□□□□□ -2.36
SHMT2P34897 AC092634.7-201ENST00000621022 103 ntBASIC0.29□□□□□ -2.36
SHMT2P34897 Y_RNA.117-201ENST00000363294 101 ntBASIC0.28□□□□□ -2.36
SHMT2P34897 RNU6-1309P-201ENST00000363305 108 ntBASIC0.28□□□□□ -2.36
SHMT2P34897 Y_RNA.152-201ENST00000363578 100 ntBASIC0.28□□□□□ -2.36
SHMT2P34897 RNU5E-4P-201ENST00000364931 120 ntBASIC0.28□□□□□ -2.36
SHMT2P34897 Y_RNA.410-201ENST00000383992 113 ntBASIC0.28□□□□□ -2.36
SHMT2P34897 SNORD12C-201ENST00000386307 89 ntBASIC0.28□□□□□ -2.36
SHMT2P34897 MT-TF-201ENST00000387314 71 ntBASIC0.28□□□□□ -2.36
SHMT2P34897 SNORA26-201ENST00000391286 122 ntBASIC0.28□□□□□ -2.36
SHMT2P34897 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.28□□□□□ -2.36
SHMT2P34897 AC002350.1-201ENST00000490759 375 ntBASIC0.28□□□□□ -2.36
SHMT2P34897 RNU6-1299P-201ENST00000516316 100 ntBASIC0.28□□□□□ -2.36
SHMT2P34897 SCARNA24.2-201ENST00000516968 130 ntBASIC0.28□□□□□ -2.36
SHMT2P34897 AC010487.4-201ENST00000637027 61 ntBASIC0.28□□□□□ -2.36
SHMT2P34897 AC090625.1-201ENST00000357130 210 ntBASIC0.27□□□□□ -2.37
SHMT2P34897 Y_RNA.7-201ENST00000362352 102 ntBASIC0.27□□□□□ -2.37
SHMT2P34897 RNU6-1189P-201ENST00000383958 107 ntBASIC0.27□□□□□ -2.37
SHMT2P34897 Y_RNA.432-201ENST00000384087 111 ntBASIC0.27□□□□□ -2.37
SHMT2P34897 RNU6-364P-201ENST00000384387 107 ntBASIC0.27□□□□□ -2.37
SHMT2P34897 SNORA26.6-201ENST00000391256 115 ntBASIC0.27□□□□□ -2.37
SHMT2P34897 RNU2-70P-201ENST00000410718 179 ntBASIC0.27□□□□□ -2.37
SHMT2P34897 SNORD2.1-201ENST00000458762 69 ntBASIC0.27□□□□□ -2.37
SHMT2P34897 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
SHMT2P34897 RNA5SP153-201ENST00000516498 76 ntBASIC0.27□□□□□ -2.37
SHMT2P34897 RNA5SP94-201ENST00000516917 108 ntBASIC0.27□□□□□ -2.37
SHMT2P34897 MIR376A2-201ENST00000636782 80 ntBASIC0.27□□□□□ -2.37
SHMT2P34897 snoU2_19.4-201ENST00000364329 80 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNA5SP517-201ENST00000364724 117 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNY3P5-201ENST00000384127 102 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 MT-TT-201ENST00000387460 66 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU6-1319P-201ENST00000390855 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU6-747P-201ENST00000390928 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU6-241P-201ENST00000391148 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU6-447P-201ENST00000410293 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU6-1118P-201ENST00000410382 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU6-1076P-201ENST00000410397 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU6-355P-201ENST00000410427 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU6-791P-201ENST00000410467 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU6-705P-201ENST00000410601 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU6-1100P-201ENST00000410691 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU6-860P-201ENST00000410860 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU6-1217P-201ENST00000411276 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU6-785P-201ENST00000411324 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 RNU7-156P-201ENST00000517214 74 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.26□□□□□ -2.37
SHMT2P34897 U6.90-201ENST00000614007 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 AP001282.2-201ENST00000616149 309 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 U6.70-201ENST00000620287 104 ntBASIC0.26□□□□□ -2.37
SHMT2P34897 Y_RNA.44-201ENST00000362676 108 ntBASIC0.25□□□□□ -2.37
SHMT2P34897 RNU6-867P-201ENST00000364956 107 ntBASIC0.25□□□□□ -2.37
SHMT2P34897 Y_RNA.304-201ENST00000365011 112 ntBASIC0.25□□□□□ -2.37
SHMT2P34897 SNORA1-201ENST00000384107 130 ntBASIC0.25□□□□□ -2.37
SHMT2P34897 RNY1P4-201ENST00000384595 115 ntBASIC0.25□□□□□ -2.37
SHMT2P34897 Y_RNA.622-201ENST00000411091 108 ntBASIC0.25□□□□□ -2.37
SHMT2P34897 AC113618.1-201ENST00000416747 285 ntBASIC0.25□□□□□ -2.37
SHMT2P34897 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.25□□□□□ -2.37
SHMT2P34897 SNRPGP8-201ENST00000454064 226 ntBASIC0.25□□□□□ -2.37
SHMT2P34897 RNU6-570P-201ENST00000517051 105 ntBASIC0.25□□□□□ -2.37
SHMT2P34897 MIR6717-201ENST00000622747 73 ntBASIC0.25□□□□□ -2.37
SHMT2P34897 MIR103A1-201ENST00000362165 78 ntBASIC0.24□□□□□ -2.37
SHMT2P34897 Y_RNA.23-201ENST00000362496 106 ntBASIC0.24□□□□□ -2.37
SHMT2P34897 RNU6-740P-201ENST00000364734 105 ntBASIC0.24□□□□□ -2.37
SHMT2P34897 MIR518A1-201ENST00000385068 85 ntBASIC0.24□□□□□ -2.37
SHMT2P34897 RNU6-679P-201ENST00000391003 106 ntBASIC0.24□□□□□ -2.37
SHMT2P34897 RNU6-985P-201ENST00000410182 104 ntBASIC0.24□□□□□ -2.37
SHMT2P34897 RNU6-651P-201ENST00000411040 105 ntBASIC0.24□□□□□ -2.37
SHMT2P34897 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.24□□□□□ -2.37
SHMT2P34897 RNU7-45P-201ENST00000459460 63 ntBASIC0.24□□□□□ -2.37
SHMT2P34897 RNU6-453P-201ENST00000516819 85 ntBASIC0.24□□□□□ -2.37
SHMT2P34897 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.24□□□□□ -2.37
SHMT2P34897 U2.14-201ENST00000615943 113 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 185.6 ms