Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC134878.1-201ENST00000619901 243 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 7SK.10-201ENST00000621414 298 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 MIR103A2-201ENST00000362154 78 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.54-201ENST00000362766 105 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 RNU4-38P-201ENST00000364472 129 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.634-201ENST00000364811 113 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 SNORA22-201ENST00000383907 134 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 SNORD61-201ENST00000384252 73 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 SNORA22C-201ENST00000384614 134 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.539-201ENST00000384635 107 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 SNORA40.5-201ENST00000391061 128 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 SNORA75.2-201ENST00000391138 150 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 SNORA75.3-201ENST00000391231 150 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 AL606845.1-201ENST00000404881 255 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 MIR1302-7-201ENST00000408841 72 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 RNU7-181P-201ENST00000517234 74 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 AC211469.2-201ENST00000605461 205 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 MIR4791-201ENST00000607666 84 ntBASIC0.97□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.410-201ENST00000383992 113 ntBASIC0.96□□□□□ -2.26
CCDC3Q9BQI4 SNORA51.10-201ENST00000384418 136 ntBASIC0.96□□□□□ -2.26
CCDC3Q9BQI4 MIR613-201ENST00000385248 95 ntBASIC0.96□□□□□ -2.26
CCDC3Q9BQI4 MRPL35P3-201ENST00000421557 364 ntBASIC0.96□□□□□ -2.26
CCDC3Q9BQI4 RNU6-693P-201ENST00000516134 107 ntBASIC0.96□□□□□ -2.26
CCDC3Q9BQI4 MIR3149-201ENST00000584629 83 ntBASIC0.96□□□□□ -2.26
CCDC3Q9BQI4 MIR373-201ENST00000362273 69 ntBASIC0.95□□□□□ -2.26
CCDC3Q9BQI4 Y_RNA.37-201ENST00000362606 108 ntBASIC0.95□□□□□ -2.26
CCDC3Q9BQI4 MT-TT-201ENST00000387460 66 ntBASIC0.95□□□□□ -2.26
CCDC3Q9BQI4 RNU6-938P-201ENST00000411285 103 ntBASIC0.95□□□□□ -2.26
CCDC3Q9BQI4 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.95□□□□□ -2.26
CCDC3Q9BQI4 RNU6-197P-201ENST00000516680 100 ntBASIC0.95□□□□□ -2.26
CCDC3Q9BQI4 RNU6-453P-201ENST00000516819 85 ntBASIC0.95□□□□□ -2.26
CCDC3Q9BQI4 MIR4744-201ENST00000581563 82 ntBASIC0.95□□□□□ -2.26
CCDC3Q9BQI4 AC243994.1-201ENST00000618627 109 ntBASIC0.95□□□□□ -2.26
CCDC3Q9BQI4 AC012676.2-201ENST00000619258 186 ntBASIC0.95□□□□□ -2.26
CCDC3Q9BQI4 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
CCDC3Q9BQI4 Y_RNA.144-201ENST00000363521 113 ntBASIC0.94□□□□□ -2.26
CCDC3Q9BQI4 SNORD45.3-201ENST00000363836 72 ntBASIC0.94□□□□□ -2.26
CCDC3Q9BQI4 SNORD114-24-201ENST00000365029 72 ntBASIC0.94□□□□□ -2.26
CCDC3Q9BQI4 RNU6-728P-201ENST00000365375 104 ntBASIC0.94□□□□□ -2.26
CCDC3Q9BQI4 Y_RNA.542-201ENST00000384641 111 ntBASIC0.94□□□□□ -2.26
CCDC3Q9BQI4 MIR532-201ENST00000385025 91 ntBASIC0.94□□□□□ -2.26
CCDC3Q9BQI4 MT-TN-201ENST00000387400 73 ntBASIC0.94□□□□□ -2.26
CCDC3Q9BQI4 RNU2-70P-201ENST00000410718 179 ntBASIC0.94□□□□□ -2.26
CCDC3Q9BQI4 snoU13.16-201ENST00000459350 104 ntBASIC0.94□□□□□ -2.26
CCDC3Q9BQI4 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.94□□□□□ -2.26
CCDC3Q9BQI4 AP000942.4-201ENST00000604811 241 ntBASIC0.94□□□□□ -2.26
CCDC3Q9BQI4 MTND1P7-201ENST00000632801 297 ntBASIC0.94□□□□□ -2.26
CCDC3Q9BQI4 Y_RNA.7-201ENST00000362352 102 ntBASIC0.93□□□□□ -2.26
CCDC3Q9BQI4 Y_RNA.447-201ENST00000384184 113 ntBASIC0.93□□□□□ -2.26
CCDC3Q9BQI4 Y_RNA.540-201ENST00000384638 111 ntBASIC0.93□□□□□ -2.26
CCDC3Q9BQI4 RNU6-613P-201ENST00000410412 108 ntBASIC0.93□□□□□ -2.26
CCDC3Q9BQI4 RNU7-73P-201ENST00000458743 63 ntBASIC0.93□□□□□ -2.26
CCDC3Q9BQI4 MIR2115-201ENST00000516657 100 ntBASIC0.93□□□□□ -2.26
CCDC3Q9BQI4 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
CCDC3Q9BQI4 AP003484.1-201ENST00000530974 250 ntBASIC0.93□□□□□ -2.26
CCDC3Q9BQI4 MIR3973-201ENST00000579824 107 ntBASIC0.93□□□□□ -2.26
CCDC3Q9BQI4 MIR3128-201ENST00000581957 66 ntBASIC0.93□□□□□ -2.26
CCDC3Q9BQI4 MIR6857-201ENST00000613267 93 ntBASIC0.93□□□□□ -2.26
CCDC3Q9BQI4 AC008163.1-202ENST00000636004 2889 ntBASIC0.93□□□□□ -2.26
CCDC3Q9BQI4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.92□□□□□ -2.26
CCDC3Q9BQI4 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
CCDC3Q9BQI4 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CCDC3Q9BQI4 Y_RNA.91-201ENST00000363042 107 ntBASIC0.92□□□□□ -2.26
CCDC3Q9BQI4 SNORA25.3-201ENST00000363205 127 ntBASIC0.92□□□□□ -2.26
CCDC3Q9BQI4 SNORD27-201ENST00000363981 72 ntBASIC0.92□□□□□ -2.26
CCDC3Q9BQI4 RNU6-396P-201ENST00000365369 105 ntBASIC0.92□□□□□ -2.26
CCDC3Q9BQI4 RNU6-1292P-201ENST00000383856 107 ntBASIC0.92□□□□□ -2.26
CCDC3Q9BQI4 Y_RNA.435-201ENST00000384095 112 ntBASIC0.92□□□□□ -2.26
CCDC3Q9BQI4 Y_RNA.626-201ENST00000411288 95 ntBASIC0.92□□□□□ -2.26
CCDC3Q9BQI4 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 MIR377-201ENST00000362145 69 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 Y_RNA.241-201ENST00000364470 117 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 SNORA20.1-201ENST00000364790 130 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 SNORA27-201ENST00000384323 126 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 RNU6-578P-201ENST00000390980 103 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 SNORD111-201ENST00000408139 94 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 SNORA79-201ENST00000408376 140 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 RNA5SP480-201ENST00000516840 109 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 MIR548AO-201ENST00000579992 96 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 AL365205.2-201ENST00000594586 68 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 AC103810.9-201ENST00000606688 112 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 AC106800.4-201ENST00000614905 153 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 PVT1_3.1-201ENST00000620853 95 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 MIR6516-201ENST00000630554 81 ntBASIC0.91□□□□□ -2.26
CCDC3Q9BQI4 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.199-201ENST00000364014 102 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.307-201ENST00000365022 117 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 RNU6-580P-201ENST00000365159 107 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.494-201ENST00000384432 111 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 MIR598-201ENST00000384868 97 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 MT-TG-201ENST00000387429 68 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 Y_RNA.622-201ENST00000411091 108 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 AF228730.3-201ENST00000436691 102 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 FABP5P4-201ENST00000437203 171 ntBASIC0.9□□□□□ -2.27
CCDC3Q9BQI4 RNU7-96P-201ENST00000459535 64 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 214.1 ms